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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Saccharomyces cerevisiae S288C"

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Search Summary

This query matches 2,743 Structures.

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Structure Determination Methodology

experimental (2,743)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (2,662)
	synthetic construct (191)
	Homo sapiens (175)
	Saccharomyces cerevisiae (174)
	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (81)
	Xenopus laevis (48)
	Escherichia coli K-12 (27)
	Kluyveromyces lactis NRRL Y-1140 (16)
	Mus musculus (16)
	Kluyveromyces lactis (12)

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Taxonomy

	Eukaryota (2,713)
	other sequences (192)
	Bacteria (83)
	Eukaryota (eukaryotes) (81)
	Monodnaviria (8)
	Duplodnaviria (7)
	Archaea (5)
	unclassified sequences (5)
	Riboviria (4)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (1,982)
	ELECTRON MICROSCOPY (622)
	SOLUTION NMR (138)
	SOLUTION SCATTERING (2)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (2,743)
	RNA (290)
	DNA (243)
	NA-hybrid (2)
	Other (1)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (106)
	1.5 - 2.0 (666)
	2.0 - 2.5 (405)
	2.5 - 3.0 (547)
	3.0 - 3.5 (392)
	3.5 - 4.0 (215)
	4.0 - 4.5 (102)
	> 4.5 (167)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (46)
	2005 - 2009 (45)
	2010 - 2014 (564)
	2015 - 2019 (1,074)
	2020 - 2024 (997)
	2025 - 2029 (14)

Enzyme Classification Name

	Hydrolases (817)
	Transferases (494)
	Oxidoreductases (120)
	Translocases (60)
	Ligases (60)
	Isomerases (42)
	Lyases (18)

Membrane Protein Annotation

	PDBTM (112)
	mpstruc (102)
	OPM (106)
	MemProtMD (76)

Symmetry Type

	Asymmetric (2,037)
	Cyclic (720)
	Dihedral (49)
	Helical (9)
	Tetrahedral (3)
	Icosahedral (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (354)
	Artifacts (457)
	All alpha proteins (272)
	Alpha and beta proteins (a/b) (268)
	All beta proteins (253)
	Membrane and cell surface proteins and peptides (6)
	Coiled coil proteins (15)
	Small proteins (13)
	Multi-domain proteins (alpha and beta) (7)
	Peptides (4)

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1 to 25 of 2,743 Structures

Page 1 of 110

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1CE9 \| pdb_00001ce9	Download File View File

HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER

Lu, M., Shu, W., Ji, H., Spek, E., Wang, L.-Y., Kallenbach, N.R.

(1999) J Mol Biology 288: 743-752

Released	1999-03-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	PROTEIN (GCN4-PMSE) (protein)

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1CMX \| pdb_00001cmx	Download File View File

STRUCTURAL BASIS FOR THE SPECIFICITY OF UBIQUITIN C-TERMINAL HYDROLASES

Johnston, S.C., Riddle, S.M., Cohen, R.E., Hill, C.P.

(1999) EMBO J 18: 3877-3887

Released	1999-07-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	PROTEIN (UBIQUITIN YUH1-UBAL) (protein)

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1DZF \| pdb_00001dzf	Download File View File

RPB5 from S.cerevisiae

Todone, F., Weinzierl, R.O.J., Brick, P., Onesti, S.

(2000) Proc Natl Acad Sci U S A 97: 6306

Released	2000-06-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 (protein)

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1FAV \| pdb_00001fav	Download File View File

THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR IN COMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE

Zhou, G., Ferrer, M., Chopra, R., Strassmaier, T., Weissenhorn, W., Skehel, J.J., Oprian, D., Schreiber, S.L., Harrison, S.C., Wiley, D.C.

(2000) Bioorg Med Chem 8: 2219-2227

Released	2000-08-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) Saccharomyces cerevisiae S288C
Macromolecule	HIV-1 ENVELOPE PROTEIN CHIMERA (protein) PROTEIN (TRANSMEMBRANE GLYCOPROTEIN) (protein)

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1FHR \| pdb_00001fhr	Download File View File

SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53 COMPLEXED WITH A PHOSPHOTYROSYL PEPTIDE

Byeon, I.-J.L., Liao, H., Yongkiettrakul, S., Tsai, M.-D.

(2000) J Mol Biology 302: 927-940

Released	2000-10-18
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1FMH \| pdb_00001fmh	Download File View File

NMR SOLUTION STRUCTURE OF A DESIGNED HETERODIMERIC LEUCINE ZIPPER

Marti, D.N., Jelesarov, I., Bosshard, H.R.

(2000) Biochemistry 39: 12804-12818

Released	2000-11-01
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	GENERAL CONTROL PROTEIN GCN4 (protein)

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1FW8 \| pdb_00001fw8	Download File View File

CIRCULARLY PERMUTED PHOSPHOGLYCERATE KINASE FROM YEAST: PGK P72

Tougard, P., Bizebard, T., Ritco-Vonsovici, M., Minard, P., Desmadril, M.

(2002) Acta Crystallogr D Biol Crystallogr 58: 2018-2023

Released	2001-03-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Phosphoglycerate kinase (protein)
Unique Ligands	GOL

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1G0V \| pdb_00001g0v	Download File View File

THE STRUCTURE OF PROTEINASE A COMPLEXED WITH A IA3 MUTANT, MVV

Phylip, L.H., Lees, W., Brownsey, B.G., Bur, D., Dunn, B.M., Winther, J., Gustchina, A., Li, M., Copeland, T., Wlodawer, A., Kay, J.

(2001) J Biological Chem 276: 2023-2030

Released	2001-04-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	PROTEASE A INHIBITOR 3 (protein) PROTEINASE A (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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1G65 \| pdb_00001g65	Download File View File

Crystal structure of epoxomicin:20s proteasome reveals a molecular basis for selectivity of alpha,beta-epoxyketone proteasome inhibitors

Groll, M., Kim, K.B., Kairies, N., Huber, R., Crews, C.

(2000) J Am Chem Soc 122: 1237-1238

Released	2000-11-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 15
Unique Ligands	MG

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1HR8 \| pdb_00001hr8	Download File View File

Yeast Mitochondrial Processing Peptidase beta-E73Q Mutant Complexed with Cytochrome C Oxidase IV Signal Peptide

Taylor, A.B., Smith, B.S., Kitada, S., Kojima, K., Miyaura, H., Otwinowski, Z., Ito, A., Deisenhofer, J.

(2001) Structure 9: 615-625

Released	2001-07-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	CYTOCHROME C OXIDASE POLYPEPTIDE IV (protein) MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT (protein) MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT (protein)
Unique Ligands	EPE, ZN

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1HR9 \| pdb_00001hr9	Download File View File

Yeast Mitochondrial Processing Peptidase beta-E73Q Mutant Complexed with Malate Dehydrogenase Signal Peptide

Taylor, A.B., Smith, B.S., Kitada, S., Kojima, K., Miyaura, H., Otwinowski, Z., Ito, A., Deisenhofer, J.

(2001) Structure 9: 615-625

Released	2001-07-11
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	MALATE DEHYDROGENASE (protein) MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT (protein) MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT (protein)
Unique Ligands	EPE, ZN

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1IJ0 \| pdb_00001ij0	Download File View File

Coiled Coil Trimer GCN4-pVLS Ser at Buried D Position

Akey, D.L., Malashkevich, V.N., Kim, P.S.

(2001) Biochemistry 40: 6352-6360

Released	2001-08-08
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	GENERAL CONTROL PROTEIN GCN4 (protein)
Unique Ligands	ZN

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1IJ1 \| pdb_00001ij1	Download File View File

GCN4-pVLT Coiled-coil Trimer with Threonine at the d(12) Position

Akey, D.L., Malashkevich, V.N., Kim, P.S.

(2001) Biochemistry 40: 6352-6360

Released	2001-08-08
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	GENERAL CONTROL PROTEIN GCN4 (protein)
Unique Ligands	ZN

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1IJ2 \| pdb_00001ij2	Download File View File

GCN4-pVTL Coiled-coil Trimer with Threonine at the a(16) position

Akey, D.L., Malashkevich, V.N., Kim, P.S.

(2001) Biochemistry 40: 6352-6360

Released	2001-08-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	GENERAL CONTROL PROTEIN GCN4 (protein)
Unique Ligands	CD

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1IJ3 \| pdb_00001ij3	Download File View File

GCN4-pVSL Coiled-coil trimer with Serine at the a(16) position

Akey, D.L., Malashkevich, V.N., Kim, P.S.

(2001) Biochemistry 40: 6352-6360

Released	2001-08-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	general control protein GCN4 (protein)

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1J4K \| pdb_00001j4k	Download File View File

SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53 COMPLEXED WITH A PHOSPHOTYROSYL PEPTIDE DERIVED FROM RAD9

Byeon, I.-J.L., Yongkiettrakul, S., Tsai, M.-D.

(2001) J Mol Biology 314: 577-588

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1J4L \| pdb_00001j4l	Download File View File

SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53 COMPLEXED WITH A PHOSPHOTHREONYL PEPTIDE DERIVED FROM RAD9

Byeon, I.-J.L., Yongkiettrakul, S., Tsai, M.-D.

(2001) J Mol Biology 314: 577-588

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1J4P \| pdb_00001j4p	Download File View File

NMR STRUCTURE OF THE FHA1 DOMAIN OF RAD53 IN COMPLEX WITH A RAD9-DERIVED PHOSPHOTHREONINE (AT T155) PEPTIDE

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1J4Q \| pdb_00001j4q	Download File View File

NMR STRUCTURE OF THE FHA1 DOMAIN OF RAD53 IN COMPLEX WITH A RAD9-DERIVED PHOSPHOTHREONINE (AT T192) PEPTIDE

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1K2M \| pdb_00001k2m	Download File View File

Solution Structure of the FHA2 Domain of Rad53 Complexed with a Phosphotyrosyl Peptide Derived from Rad9

Byeon, I.-J.L., Yongkiettrakul, S., Tsai, M.-D.

(2001) J Mol Biology 314: 577-588

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA repair protein Rad9 (protein) Protein Kinase SPK1 (protein)

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1K2N \| pdb_00001k2n	Download File View File

Solution Structure of the FHA2 domain of Rad53 Complexed with a Phosphothreonyl Peptide Derived from Rad9

Byeon, I.-J.L., Yongkiettrakul, S., Tsai, M.-D.

(2001) J Mol Biology 314: 577-588

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA repair protein Rad9 (protein) Protein Kinase SPK1 (protein)

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1K3N \| pdb_00001k3n	Download File View File

NMR Structure of the FHA1 Domain of Rad53 in Complex with a Rad9-derived Phosphothreonine (at T155) Peptide

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA repair protein Rad9 (protein) Protein Kinase SPK1 (protein)

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1K3Q \| pdb_00001k3q	Download File View File

NMR structure of the FHA1 Domain of Rad53 in Complex with a Rad9-derived Phosphothreonine (at T192) Peptide

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA repair protein Rad9 (protein) Protein Kinase SPK1 (protein)

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1K61 \| pdb_00001k61	Download File View File

MATALPHA2 HOMEODOMAIN BOUND TO DNA

Aishima, J., Gitti, R.K., Noah, J.E., Gan, H.H., Schlick, T., Wolberger, C.

(2002) Nucleic Acids Res 30: 5244-5252

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	Mating-type protein alpha-2 (protein) 5'-D((5IU)PGPCPGPTPGPTPAPAPAPTPGPAPAPTPTPAPCPAPTPG)-3' (nucleic acid) 5'-D(APCPAPTPGPTPAPAPTPTPCPAPTPTPTPAPCPAPCPGPC)-3' (nucleic acid)

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1M1D \| pdb_00001m1d	Download File View File

TETRAHYMENA GCN5 WITH BOUND BISUBSTRATE ANALOG INHIBITOR

Poux, A.N., Cebrat, M., Kim, C.M., Cole, P.A., Marmorstein, R.

(2002) Proc Natl Acad Sci U S A 99: 14065-14070

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) Tetrahymena thermophila
Macromolecule	HISTONE H3 (protein) TGCN5 HISTONE ACETYL TRANSFERASE (protein)

1 to 25 of 2,743 Structures

Page 1 of 110

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CE9 | pdb_00001ce9

1CMX | pdb_00001cmx

1DZF | pdb_00001dzf

1FAV | pdb_00001fav

1FHR | pdb_00001fhr

1FMH | pdb_00001fmh

1FW8 | pdb_00001fw8

1G0V | pdb_00001g0v

1G65 | pdb_00001g65

1HR8 | pdb_00001hr8

1HR9 | pdb_00001hr9

1IJ0 | pdb_00001ij0

1IJ1 | pdb_00001ij1

1IJ2 | pdb_00001ij2

1IJ3 | pdb_00001ij3

1J4K | pdb_00001j4k

1J4L | pdb_00001j4l

1J4P | pdb_00001j4p

1J4Q | pdb_00001j4q

1K2M | pdb_00001k2m

1K2N | pdb_00001k2n

1K3N | pdb_00001k3n

1K3Q | pdb_00001k3q

1K61 | pdb_00001k61

1M1D | pdb_00001m1d