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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 38309262

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Lactococcus phage TP901-1 (10)
	Chlorella variabilis (6)
	Lactococcus phage 1358 (5)
	Bacillus phage SPP1 (4)
	Lactococcus virus P2 (3)
	Lama glama (3)
	Trichoderma reesei QM6a (3)
	Camelus dromedarius (2)
	Escherichia coli 042 (2)
	Lactococcus phage Tuc2009 (2)

More...

Taxonomy

	Duplodnaviria (23)
	Eukaryota (14)
	Bacteria (5)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (38)

Polymer Entity Type

Protein (38)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (17)
	2.0 - 2.5 (11)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (20)
	2015 - 2019 (5)
	2020 - 2024 (6)

Enzyme Classification Name

	Lyases (6)
	Hydrolases (3)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Cyclic (22)
	Asymmetric (17)

SCOP Classification

	All beta proteins (11)
	Artifacts (7)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 38 Structures

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1ZRU \| pdb_00001zru	Download File View File

structure of the lactophage p2 receptor binding protein in complex with glycerol

Spinelli, S., Tremblay, D.M., Tegoni, M., Blangy, S., Huyghe, C., Desmyter, A., Labrie, S., de Haard, H., Moineau, S., Cambillau, C., Structural Proteomics in Europe (SPINE)

(2006) J Bacteriol 188: 2400-2410

Released	2006-03-28
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Lactococcus virus P2
Macromolecule	lactophage p2 receptor binding protein (protein)
Unique Ligands	GOL

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2ACO \| pdb_00002aco	Download File View File

Xray structure of Blc dimer in complex with vaccenic acid

Campanacci, V., Bishop, R.E., Reese, L., Blangy, S., Tegoni, M., Cambillau, C.

(2006) FEBS Lett 580: 4877-4883

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Outer membrane lipoprotein blc (protein)
Unique Ligands	VCA

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2XC8 \| pdb_00002xc8	Download File View File

Crystal structure of the gene 22 product of the Bacillus subtilis SPP1 phage

Veesler, D., Blangy, S., Tavares, P., Campanacci, V., Cambillau, C.

(2010) Protein Sci 19: 1439

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bacillus phage SPP1
Macromolecule	GENE 22 PRODUCT (protein)

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2XF5 \| pdb_00002xf5	Download File View File

Crystal structure of Bacillus subtilis SPP1 phage gp23.1, a putative chaperone.

Veesler, D., Blangy, S., Lichiere, J., Ortiz-Lombardia, M., Tavares, P., Campanacci, V., Cambillau, C.

(2010) Protein Sci 19: 1812

Released	2010-08-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus phage SPP1
Macromolecule	GP23.1 (protein)

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2XF6 \| pdb_00002xf6	Download File View File

Crystal structure of Bacillus subtilis SPP1 phage gp23.1, a putative chaperone.

Veesler, D., Blangy, S., Lichiere, J., Ortiz-Lombardia, M., Tavares, P., Campanacci, V., Cambillau, C.

(2010) Protein Sci 19: 1812

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Bacillus phage SPP1
Macromolecule	GP23.1 (protein)

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2XF7 \| pdb_00002xf7	Download File View File

Crystal structure of Bacillus subtilis SPP1 phage gp23.1, a putative chaperone. High-resolution structure.

Veesler, D., Blangy, S., Lichiere, J., Ortiz-Lombardia, M., Tavares, P., Campanacci, V., Cambillau, C.

(2010) Protein Sci 19: 1812

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Bacillus phage SPP1
Macromolecule	GP23.1 (protein)

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3D8M \| pdb_00003d8m	Download File View File

Crystal structure of a chimeric receptor binding protein from lactococcal phages subspecies TP901-1 and p2

Siponen, M.I., Blangy, S., Spinelli, S., Cambillau, C., Campanacci, V.

(2009) J Bacteriol 191: 3220-3225

Released	2009-04-14
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Lactococcus phage TP901-1 Lactococcus virus P2
Macromolecule	Baseplate protein, Receptor binding protein (protein)

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3D9B \| pdb_00003d9b	Download File View File

Symmetric structure of E. coli AcrB

Veesler, D., Blangy, S., Cambillau, C., Sciara, G.

(2008) Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 880-885

Released	2008-07-01
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Acriflavine resistance protein B (protein)
Unique Ligands	NI

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3DA0 \| pdb_00003da0	Download File View File

Crystal structure of a cleaved form of a chimeric receptor binding protein from Lactococcal phages subspecies TP901-1 and p2

Siponen, M.I., Blangy, S., Spinelli, S., Vera, L., Cambillau, C., Campanacci, V.

(2009) J Bacteriol 191: 3220-3225

Released	2009-06-09
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Lactococcus phage TP901-1 Lactococcus virus P2
Macromolecule	Cleaved chimeric receptor binding protein from bacteriophages TP901-1 and p2 (protein)

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3EJC \| pdb_00003ejc	Download File View File

Full length Receptor Binding Protein from Lactococcal phage TP901-1

Spinelli, S., Lichiere, J., Blangy, S., Sciara, G., Cambillau, C., Campanacci, V.

(2010) J Biological Chem 285: 39079-39086

Released	2009-10-06
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Lactococcus phage TP901-1
Macromolecule	Baseplate protein (BPP) (protein)

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3HG0 \| pdb_00003hg0	Download File View File

Crystal structure of a DARPin in complex with ORF49 from Lactococcal phage TP901-1

Veesler, D., Dreier, B., Blangy, S., Lichiere, J., Tremblay, D., Moineau, S., Spinelli, S., Tegoni, M., Pluckthun, A., Campanacci, V., Cambillau, C.

(2009) J Biological Chem 284: 30718-30726

Released	2009-09-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lactococcus phage TP901-1 synthetic construct
Macromolecule	Baseplate protein (protein) Designed Ankyrin Repeat Protein (DARPin) 20 (protein)

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3RX9 \| pdb_00003rx9	Download File View File

3D structure of SciN from an Escherichia coli Patotype

Felisberto-Rodrigues, C., Durand, E., Aschtgen, M.-S., Blangy, S., Ortiz-Lombardia, M., Douzy, B., Cambillau, C., Cascales, E.

(2011) PLoS Pathog 7: e1002386-e1002386

Released	2011-12-07
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Escherichia coli 55989
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	SO4

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3U6X \| pdb_00003u6x	Download File View File

Phage TP901-1 baseplate tripod

Veesler, D., Spinelli, S., Mahony, J., Lichiere, J., Blangy, S., Bricogne, G., Legrand, P., Ortiz-Lombardia, M., Campanacci, V.I., van Sinderen, D., Cambillau, C.

(2012) Proc Natl Acad Sci U S A 109: 8954-8958

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lactococcus phage TP901-1
Macromolecule	BPP (protein) ORF48 (protein)
Unique Ligands	BR

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3UH8 \| pdb_00003uh8	Download File View File

N-terminal domain of phage TP901-1 ORF48

Veesler, D., Spinelli, S., Mahony, J., Lichiere, J., Blangy, S., Bricogne, G., Legrand, P., Ortiz-Lombardia, M., Campanacci, V.I., van Sinderen, D., Cambillau, C.

(2012) Proc Natl Acad Sci U S A 109: 8954-8958

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lactococcus phage TP901-1
Macromolecule	ORF48 (protein)

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4EQQ \| pdb_00004eqq	Download File View File

Structure of Ltp, a superinfection exclusion protein from the Streptococcus thermophilus temperate phage TP-J34

Bebeacua, C., Lorenzo, C., Blangy, S., Spinelli, S., Heller, K., Cambillau, C.

(2013) Mol Microbiol 89: 152-165

Released	2013-06-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Streptococcus phage TP-J34
Macromolecule	Putative host cell surface-exposed lipoprotein (protein)
Unique Ligands	PO4, SO4

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4HEM \| pdb_00004hem	Download File View File

Llama vHH-02 binder of ORF49 (RBP) from lactococcal phage TP901-1

Desmyter, A., Spinelli, S., Farenc, C., Blangy, S., Bebeacua, C., van Sinderen, D., Mahony, J., Cambillau, C.

(2013) Proc Natl Acad Sci U S A 110: E1371-E1379

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Lactococcus phage TP901-1 Lama glama
Macromolecule	Anti-baseplate TP901-1 Llama vHH 02 (protein) BPP (protein)

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4HEP \| pdb_00004hep	Download File View File

Complex of lactococcal phage TP901-1 with a llama vHH (vHH17) binder (nanobody)

Desmyter, A., Spinelli, S., Farenc, C., Blangy, S., Bebeacua, C., van Sinderen, D., Mahony, J., Cambillau, C.

(2013) Proc Natl Acad Sci U S A 110: E1371-E1379

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Lactococcus phage TP901-1 Lama glama
Macromolecule	BPP (protein) vHH17 domain (protein)
Unique Ligands	SO4

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4HKH \| pdb_00004hkh	Download File View File

Structure of the Hcp1 protein from E. coli EAEC 042 pathovar, mutants N93W-S158W

Douzi, B., Spinelli, S., Derrez, E., Blangy, S., Brunet, Y.R., Cascales, E., Cambillau, C.

To be published

Released	2013-12-11
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Escherichia coli 042
Macromolecule	Putative type VI secretion protein (protein)
Unique Ligands	SO4

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4IOS \| pdb_00004ios	Download File View File

Structure of phage TP901-1 RBP (ORF49) in complex with nanobody 11.

Desmyter, A., Farenc, C., Mahony, J., Spinelli, S., Bebeacua, C., Blangy, S., Veesler, D., van Sinderen, D., Cambillau, C.

(2013) Proc Natl Acad Sci U S A 110: E1371-E1379

Released	2013-03-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lactococcus phage TP901-1 Lama glama
Macromolecule	BPP (protein) Llama nanobody 11 (protein)
Unique Ligands	GOL

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4L92 \| pdb_00004l92	Download File View File

Structure of the RBP from lactococcal phage 1358 in complex with 2 GlcNAc molecules

Farenc, C., Spinelli, S., Bebeacua, C., Tremblay, D., Orlov, I., Blangy, S., Klaholz, B.P., Moineau, S., Cambillau, C.

To be published

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lactococcus phage 1358
Macromolecule	Receptor Binding Protein (protein)
Unique Ligands	NAG, NDG, ZN

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4L97 \| pdb_00004l97	Download File View File

Structure of the RBP of lactococcal phage 1358 in complex with glucose-1-phosphate

Farenc, C., Spinelli, S., Bebeacua, C., Tremblay, D., Orlov, I., Blangy, S., Klaholz, B.P., Moineau, S., Cambillau, C.

To be published

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Lactococcus phage 1358
Macromolecule	Receptor Binding Protein (protein)
Unique Ligands	G1P

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4L99 \| pdb_00004l99	Download File View File

Structure of the RBP from lactococcal phage 1358 in complex with glycerol

Farenc, C., Spinelli, S., Bebeacua, C., Tremblay, D., Orlov, I., Blangy, S., Klaholz, B.P., Moineau, S., Cambillau, C.

To be published

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lactococcus phage 1358
Macromolecule	Receptor Binding Protein (protein)
Unique Ligands	GOL, ZN

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4L9B \| pdb_00004l9b	Download File View File

Structure of native RBP from lactococcal phage 1358 (CsI derivative)

Farenc, C., Spinelli, S., Bebeacua, C., Tremblay, D., Orlov, I., Blangy, S., Klaholz, B.P., Moineau, S., Cambillau, C.

To be published

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Lactococcus phage 1358
Macromolecule	Receptor Binding Protein (protein)
Unique Ligands	CS

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4PS2 \| pdb_00004ps2	Download File View File

Structure of the C-terminal fragment (87-165) of E.coli EAEC TssB molecule

Douzi, B., Logger, L., Spinelli, S., Blangy, S., Cambillau, C., Cascales, E.

To be published

Released	2015-03-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli 042
Macromolecule	Putative type VI secretion protein (protein)
Unique Ligands	CL, ZN

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4PSC \| pdb_00004psc	Download File View File

Structure of cutinase from Trichoderma reesei in its native form.

Roussel, A., Amara, S., Nyyssola, A., Mateos-Diaz, E., Blangy, S., Kontkanen, H., Westerholm-Parvinen, A., Carriere, F., Cambillau, C.

(2014) J Mol Biology 426: 3757-3772

Released	2014-09-17
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Trichoderma reesei QM6a
Macromolecule	Carbohydrate esterase family 5 (protein)
Unique Ligands	GOL

1 to 25 of 38 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZRU | pdb_00001zru

2ACO | pdb_00002aco

2XC8 | pdb_00002xc8

2XF5 | pdb_00002xf5

2XF6 | pdb_00002xf6

2XF7 | pdb_00002xf7

3D8M | pdb_00003d8m

3D9B | pdb_00003d9b

3DA0 | pdb_00003da0

3EJC | pdb_00003ejc

3HG0 | pdb_00003hg0

3RX9 | pdb_00003rx9

3U6X | pdb_00003u6x

3UH8 | pdb_00003uh8

4EQQ | pdb_00004eqq

4HEM | pdb_00004hem

4HEP | pdb_00004hep

4HKH | pdb_00004hkh

4IOS | pdb_00004ios

4L92 | pdb_00004l92

4L97 | pdb_00004l97

4L99 | pdb_00004l99

4L9B | pdb_00004l9b

4PS2 | pdb_00004ps2

4PSC | pdb_00004psc