1VJO

Crystal structure of Alanine--glyoxylate aminotransferase (ALR1004) from Nostoc sp. at 1.70 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.151 
  • R-Value Observed: 0.154 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of an alanine-glyoxylate aminotransferase from Anabaena sp. at 1.70 A resolution reveals a noncovalently linked PLP cofactor

Han, G.W.Schwarzenbacher, R.Page, R.Jaroszewski, L.Abdubek, P.Ambing, E.Biorac, T.Canaves, J.M.Chiu, H.J.Dai, X.Deacon, A.M.DiDonato, M.Elsliger, M.A.Godzik, A.Grittini, C.Grzechnik, S.K.Hale, J.Hampton, E.Haugen, J.Hornsby, M.Klock, H.E.Koesema, E.Kreusch, A.Kuhn, P.Lesley, S.A.Levin, I.McMullan, D.McPhillips, T.M.Miller, M.D.Morse, A.Moy, K.Nigoghossian, E.Ouyang, J.Paulsen, J.Quijano, K.Reyes, R.Sims, E.Spraggon, G.Stevens, R.C.van den Bedem, H.Velasquez, J.Vincent, J.von Delft, F.Wang, X.West, B.White, A.Wolf, G.Xu, Q.Zagnitko, O.Hodgson, K.O.Wooley, J.Wilson, I.A.

(2005) Proteins 58: 971-975


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
alanine--glyoxylate aminotransferase393Nostoc sp. PCC 7120 = FACHB-418Mutation(s): 8 
EC: 2.6.1.44
UniProt
Find proteins for Q8YY48 (Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
Explore Q8YY48 
Go to UniProtKB:  Q8YY48
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8YY48
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLP
Query on PLP

Download Ideal Coordinates CCD File 
B [auth A]PYRIDOXAL-5'-PHOSPHATE
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.258α = 90
b = 101.057β = 90
c = 97.252γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALAdata scaling
SHELXDphasing
REFMACrefinement
CCP4data scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-03-23
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Derived calculations, Source and taxonomy, Version format compliance
  • Version 1.3: 2023-01-25
    Changes: Database references, Derived calculations