Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with oxonate
Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Dihydroorotate dehydrogenase | 314 | Trypanosoma cruzi | Mutation(s): 0  Gene Names: TCDHOD2 EC: 1.3.3.1 (PDB Primary Data), 1.3.98.1 (UniProt) | ||
UniProt | |||||
Find proteins for Q4D3W2 (Trypanosoma cruzi (strain CL Brener)) Explore Q4D3W2  Go to UniProtKB:  Q4D3W2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q4D3W2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FMN Query on FMN | D [auth A], J [auth B] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N | |||
NCO Query on NCO | C [auth A] | COBALT HEXAMMINE(III) Co H18 N6 DYLMFCCYOUSRTK-UHFFFAOYSA-N | |||
OXC Query on OXC | E [auth A], K [auth B] | OXONIC ACID C4 H5 N3 O4 IRFZLMWJJPULRF-UHFFFAOYSA-N | |||
GOL Query on GOL | F [auth A], G [auth A], H [auth A], I [auth A], L [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 68.359 | α = 90 |
b = 71.828 | β = 90 |
c = 123.639 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |