3ZPD

Solution structure of the FimH adhesin carbohydrate-binding domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 25 
  • Selection Criteria: LOWEST OVERALL ENERGY 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Study of the Structural and Dynamic Effects in the Fimh Adhesin Upon Alpha-D-Heptyl Mannose Binding.

Vanwetswinkel, S.Volkov, A.N.Sterckx, Y.G.J.Garcia-Pino, A.Buts, L.Vranken, W.F.Bouckaert, J.Roy, R.Wyns, L.Van Nuland, N.A.J.

(2014) J Med Chem 57: 1416

  • DOI: https://doi.org/10.1021/jm401666c
  • Primary Citation of Related Structures:  
    3ZPD, 4LOV

  • PubMed Abstract: 

    Uropathogenic Escherichia coli cause urinary tract infections by adhering to mannosylated receptors on the human urothelium via the carbohydrate-binding domain of the FimH adhesin (FimHL). Numerous α-d-mannopyranosides, including α-d-heptyl mannose (HM), inhibit this process by interacting with FimHL. To establish the molecular basis of the high-affinity HM binding, we solved the solution structure of the apo form and the crystal structure of the FimHL-HM complex. NMR relaxation analysis revealed that protein dynamics were not affected by the sugar binding, yet HM addition promoted protein dimerization, which was further confirmed by small-angle X-ray scattering. Finally, to address the role of Y48, part of the "tyrosine gate" believed to govern the affinity and specificity of mannoside binding, we characterized the FimHL Y48A mutant, whose conformational, dynamical, and HM binding properties were found to be very similar to those of the wild-type protein.


  • Organizational Affiliation

    Jean Jeener NMR Centre, Structural Biology Brussels, Vrije Universiteit Brussel , Pleinlaan 2, 1050 Brussels, Belgium.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FIMH158Escherichia coli J96Mutation(s): 0 
UniProt
Find proteins for A2IC68 (Escherichia coli)
Explore A2IC68 
Go to UniProtKB:  A2IC68
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA2IC68
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 25 
  • Selection Criteria: LOWEST OVERALL ENERGY 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-02-12
    Type: Initial release
  • Version 1.1: 2014-03-12
    Changes: Database references
  • Version 2.0: 2023-06-14
    Changes: Atomic model, Data collection, Database references, Other
  • Version 2.1: 2024-11-20
    Changes: Data collection, Database references, Structure summary