Crystal structure of Yersinia pestis GlmU in complex with alpha-D-glucosamine 1-phosphate (GP1)
Nocek, B., Kuhn, M., Anderson, W.F., Joachimiak, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Bifunctional protein GlmU | 459 | Yersinia pestis CO92 | Mutation(s): 0  Gene Names: glmU, YPTB3965 EC: 2.7.7.23 (PDB Primary Data), 2.3.1.157 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for Q8Z9S7 (Yersinia pestis) Explore Q8Z9S7  Go to UniProtKB:  Q8Z9S7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8Z9S7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GP1 Query on GP1 | D [auth A] | 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose C6 H14 N O8 P YMJBYRVFGYXULK-QZABAPFNSA-N | |||
EDO Query on EDO | E [auth A], F [auth A], G [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | B [auth A], C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 87.571 | α = 90 |
b = 87.571 | β = 90 |
c = 251.368 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
MOLREP | phasing |
REFMAC | refinement |
SBC-Collect | data collection |
HKL-3000 | data reduction |
HKL-3000 | data scaling |