Crystal structure of 5-carboxyvanillate decarboxylase from Sphingomonas paucimobilis complexed with vanillic acid
Fedorov, A.A., Fedorov, E.V., Vladimirova, A., Raushel, F.M., Almo, S.C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
5-carboxyvanillate decarboxylase | 335 | Sphingomonas paucimobilis | Mutation(s): 0  Gene Names: ligW | ||
UniProt | |||||
Find proteins for Q8RJ47 (Sphingomonas paucimobilis) Explore Q8RJ47  Go to UniProtKB:  Q8RJ47 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8RJ47 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EPE Query on EPE | BA [auth D] GA [auth E] LA [auth F] M [auth A] QA [auth G] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
VNL Query on VNL | AA [auth D] DA [auth E] EA [auth E] FA [auth E] J [auth A] | 4-HYDROXY-3-METHOXYBENZOATE C8 H7 O4 WKOLLVMJNQIZCI-UHFFFAOYSA-M | |||
PEG Query on PEG | HA [auth E] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
GOL Query on GOL | X [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
MN Query on MN | CA [auth E] I [auth A] IA [auth F] MA [auth G] N [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 80.592 | α = 109.71 |
b = 96.917 | β = 90.53 |
c = 97.029 | γ = 111.89 |
Software Name | Purpose |
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CBASS | data collection |
BALBES | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |