Crystal structure of plant Photosystem I at 3.1 Angstrom resolution
Mazor, Y., Borovikova, A., Greenberg, I., Nelson, N.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A1 | 721 | Pisum sativum | Mutation(s): 0  EC: 1.97.1.12 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P05310 (Pisum sativum) Explore P05310  Go to UniProtKB:  P05310 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05310 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A2 | 731 | Pisum sativum | Mutation(s): 0  EC: 1.97.1.12 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P05311 (Pisum sativum) Explore P05311  Go to UniProtKB:  P05311 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05311 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I iron-sulfur center | 80 | Pisum sativum | Mutation(s): 0  EC: 1.97.1.12 | ||
UniProt | |||||
Find proteins for P10793 (Pisum sativum) Go to UniProtKB:  P10793 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit II, chloroplastic | 137 | Pisum sativum | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for E1C9K8 (Pisum sativum) Explore E1C9K8  Go to UniProtKB:  E1C9K8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | E1C9K8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IV B, chloroplastic | 63 | Pisum sativum | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for E1C9K6 (Pisum sativum) Go to UniProtKB:  E1C9K6 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit III, chloroplastic | 152 | Pisum sativum | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for A0A0H2UKZ4 (Pisum sativum) Explore A0A0H2UKZ4  Go to UniProtKB:  A0A0H2UKZ4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0H2UKZ4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit V, chloroplastic | 84 | Pisum sativum | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P20120 (Pisum sativum) Explore P20120  Go to UniProtKB:  P20120 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20120 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VI, chloroplastic | 82 | Pisum sativum | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for E1C9K9 (Pisum sativum) Go to UniProtKB:  E1C9K9 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VIII | 26 | Pisum sativum | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P17227 (Pisum sativum) Explore P17227  Go to UniProtKB:  P17227 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P17227 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IX | 40 | Pisum sativum | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for D5MAL3 (Pisum sativum) Go to UniProtKB:  D5MAL3 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit X psaK | 72 | Pisum sativum | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for E1C9L3 (Pisum sativum) Go to UniProtKB:  E1C9L3 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XI, chloroplastic | 163 | Pisum sativum | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for E1C9L1 (Pisum sativum) Go to UniProtKB:  E1C9L1 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I-N subunit | M [auth N] | 85 | Pisum sativum | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for E1C9K7 (Pisum sativum) Explore E1C9K7  Go to UniProtKB:  E1C9K7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | E1C9K7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein 6A, chloroplastic | N [auth 1] | 182 | Pisum sativum | Mutation(s): 0  | |
UniProt | |||||
Find proteins for E1C9L2 (Pisum sativum) Go to UniProtKB:  E1C9L2 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Type II chlorophyll a/b binding protein from photosystem I | O [auth 2] | 199 | Pisum sativum | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q41038 (Pisum sativum) Go to UniProtKB:  Q41038 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein 3, chloroplastic | P [auth 3] | 275 | Pisum sativum | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q32904 (Pisum sativum) Go to UniProtKB:  Q32904 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein P4, chloroplastic | Q [auth 4] | 196 | Pisum sativum | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q9SQL2 (Pisum sativum) Go to UniProtKB:  Q9SQL2 | |||||
Sequence AnnotationsExpand | |||||
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Ligands 11 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | XB [auth B] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CL0 Query on CL0 | SB [auth A] | CHLOROPHYLL A ISOMER C55 H72 Mg N4 O5 VIQFHHZSLDFWDU-DVXFRRMCSA-M | |||
CLA Query on CLA | AA [auth A] AB [auth A] AD [auth B] AE [auth G] AF [auth 1] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
LMG Query on LMG | DE [auth G], JE [auth J] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
LHG Query on LHG | IF [auth 1], WB [auth B], Y [auth A], Z [auth A], ZF [auth 2] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
NEX Query on NEX | HH [auth 4] | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL C40 H56 O4 PGYAYSRVSAJXTE-OQASCVKESA-N | |||
LUT Query on LUT | FH [auth 4] GH [auth 4] SE [auth 1] TE [auth 1] XF [auth 2] | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL C40 H56 O2 KBPHJBAIARWVSC-NSIPBSJQSA-N | |||
BCR Query on BCR | AC [auth B] BC [auth B] CC [auth B] CE [auth G] DC [auth B] | BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N | |||
PQN Query on PQN | R [auth A], VB [auth B] | PHYLLOQUINONE C31 H46 O2 MBWXNTAXLNYFJB-NKFFZRIASA-N | |||
SF4 Query on SF4 | RB [auth A], TD [auth C], UD [auth C] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
G3P Query on G3P | IH [auth 4] | SN-GLYCEROL-3-PHOSPHATE C3 H9 O6 P AWUCVROLDVIAJX-GSVOUGTGSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 120.631 | α = 90 |
b = 189.168 | β = 91.11 |
c = 129.667 | γ = 90 |
Software Name | Purpose |
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MxCuBE | data collection |
MOLREP | phasing |
PHENIX | refinement |
XDS | data reduction |
SCALA | data scaling |