6TLH | pdb_00006tlh

Crystal structure of mouse KANK3 ankyrin repeats

• PDB DOI: https://doi.org/10.2210/pdb6TLH/pdb

• Classification: CELL ADHESION
• Organism(s): Mus musculus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2019-12-02 Released: 2020-12-16 
• Deposition Author(s): Khan, R., Singh, A.K., Goult, B.T.
• Funding Organization(s): Biotechnology and Biological Sciences Research Council, Human Frontier Science Program

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.236 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.199 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.201 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of mouse KANK3 ankyrin repeats

Khan, R., Singh, A.K., Goult, B.T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 54.6 kDa 
• Atom Count: 3,950 
• Modelled Residue Count: 480 
• Deposited Residue Count: 512 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
KN motif and ankyrin repeat domain-containing protein 3	A, B	256	Mus musculus	Mutation(s): 0  Gene Names: Kank3, Ankrd47, D17Ertd288e, Ng28
UniProt
Find proteins for Q9Z1P7 (Mus musculus) Explore Q9Z1P7  Go to UniProtKB:  Q9Z1P7

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	C [auth A], E [auth B], F [auth B], G [auth B], H [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
FMT	D [auth A]	FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.236 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.199 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.201 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 149.437	α = 90
b = 45.778	β = 95.06
c = 69.596	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-12-16 
Deposition Author(s): Khan, R., Singh, A.K., Goult, B.T.

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Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council	United Kingdom	BB/N007336/1
Biotechnology and Biological Sciences Research Council	United Kingdom	BBS007245/1
Human Frontier Science Program		RGP00001/2016

Revision History  

• Version 1.0: 2020-12-16
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Refinement description