7RDG

Crystal structure of D103A human Galectin-7 mutant in presence of lactose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.210 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of D103A human Galectin-7 mutant in presence of lactose

Pham, N.T.H.Calmettes, C.Doucet, N.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Galectin-7C [auth A],
B,
A [auth C],
D
135Homo sapiensMutation(s): 1 
Gene Names: LGALS7PIG1LGALS7B
UniProt & NIH Common Fund Data Resources
Find proteins for P47929 (Homo sapiens)
Explore P47929 
Go to UniProtKB:  P47929
PHAROS:  P47929
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47929
Protein Feature View
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
beta-D-galactopyranose-(1-4)-alpha-D-glucopyranoseE, F, G, H 2N/AN/A Oligosaccharides Interaction
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download Ideal Coordinates CCD File 
I [auth C],
J [auth A],
K [auth A]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2
IDChainsNameType/Class2D Diagram3D Interactions
PRD_900008
Query on PRD_900008
E, F, G, Halpha-lactoseOligosaccharide / Nutrient Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.210 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 30.33α = 90
b = 112.28β = 91.08
c = 77.04γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN 2016-05557
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM105978
Other governmentCanadaFonds de Recherche du Quebec - Sante (FRQ-S) - Research Scholar Senior Career Award (281993)
Other governmentCanadaFonds de Recherche du Quebec - Sante (FRQ-S) - Junior 1 (251848)
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2017-06091
Other governmentCanadaFonds de Recherche du Quebec - Sante (FRQ-S) - Doctoral Training scholarship (287239)

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-25
    Type: Initial release