Download MendeleyAI-empowered integrative structural characterization of m6A methyltransferase complex
Yan, X., Pei, K., Guan, Z., Liu, F., Yan, J., Jin, X., Wang, Q., Hou, M., Tang, C., Yin, P.(2022) Cell Res 32: 1124-1127
7YFJ
Crystal structure of human WTAP
- PDB DOI: 10.2210/pdb7YFJ/pdb
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-07-08 Released: 2023-01-25
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.240
- R-Value Work: 0.220
- R-Value Observed: 0.221
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pre-mRNA-splicing regulator WTAP | A, B | 122 | Homo sapiens | Mutation(s): 0 Gene Names: WTAP, KIAA0105 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15007 (Homo sapiens) Explore Q15007 Go to UniProtKB: Q15007 | |||||
PHAROS: Q15007 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q15007 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | D [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | C [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.240
- R-Value Work: 0.220
- R-Value Observed: 0.221
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.754 | α = 90 |
| b = 62.754 | β = 90 |
| c = 336.345 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXDE | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-01-25 Deposition Author(s): Yan, X.H., Guan, Z.Y., Tang, C., Yin, P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-01-25
Type: Initial release
