7ZSG

Structure of Orange Carotenoid Protein with canthaxanthin bound after 1 minute of illumination


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.194 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Light activation of Orange Carotenoid Protein reveals bicycle-pedal single-bond isomerization.

Chukhutsina, V.U.Baxter, J.M.Fadini, A.Morgan, R.M.Pope, M.A.Maghlaoui, K.Orr, C.M.Wagner, A.van Thor, J.J.

(2022) Nat Commun 13: 6420-6420

  • DOI: https://doi.org/10.1038/s41467-022-34137-4
  • Primary Citation of Related Structures:  
    7ZSF, 7ZSG, 7ZSH, 7ZSI, 7ZSJ

  • PubMed Abstract: 

    Orange Carotenoid protein (OCP) is the only known photoreceptor which uses carotenoid for its activation. It is found exclusively in cyanobacteria, where it functions to control light-harvesting of the photosynthetic machinery. However, the photochemical reactions and structural dynamics of this unique photosensing process are not yet resolved. We present time-resolved crystal structures at second-to-minute delays under bright illumination, capturing the early photoproduct and structures of the subsequent reaction intermediates. The first stable photoproduct shows concerted isomerization of C9'-C8' and C7'-C6' single bonds in the bicycle-pedal (s-BP) manner and structural changes in the N-terminal domain with minute timescale kinetics. These are followed by a thermally-driven recovery of the s-BP isomer to the dark state carotenoid configuration. Structural changes propagate to the C-terminal domain, resulting, at later time, in the H-bond rupture of the carotenoid keto group with protein residues. Solution FTIR and UV/Vis spectroscopy support the single bond isomerization of the carotenoid in the s-BP manner and subsequent thermal structural reactions as the basis of OCP photoreception.


  • Organizational Affiliation

    Department of Life Sciences, Imperial College London, London, SW7 2AZ, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Orange carotenoid-binding proteinA [auth 1]327SynechocystisMutation(s): 0 
Gene Names: slr1963
UniProt
Find proteins for P74102 (Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa))
Explore P74102 
Go to UniProtKB:  P74102
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP74102
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.194 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.58α = 90
b = 82.58β = 90
c = 87.22γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
DIALSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Molecular Biology Organization (EMBO)European UnionEMBO ALTF 244-2017
H2020 Marie Curie Actions of the European CommissionEuropean Union839389
Leverhulme TrustUnited KingdomRPG-2018-372
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/D524840/1
Wellcome TrustUnited Kingdom202926/Z/16/Z

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-09
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description