8CKG

Semaphorin-5A TSR 3-4 domains in complex with sulfate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.207 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history



Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Semaphorin-5A
A, B
125Homo sapiensMutation(s): 2 
Gene Names: SEMA5ASEMAF
UniProt & NIH Common Fund Data Resources
Find proteins for Q13591 (Homo sapiens)
Explore Q13591 
Go to UniProtKB:  Q13591
PHAROS:  Q13591
GTEx:  ENSG00000112902 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13591
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.207 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.081α = 90
b = 29.286β = 100.46
c = 90.429γ = 90
Software Package:
Software NamePurpose
autoPROCdata processing
CRANK2phasing
PHENIXrefinement
Cootmodel building
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/T000503/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-28
    Type: Initial release