8EUO

Hydroxynitrile Lyase from Hevea brasiliensis with Seven Mutations

• PDB DOI: https://doi.org/10.2210/pdb8EUO/pdb

• Classification: LYASE
• Organism(s): Hevea brasiliensis
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2022-10-19 Released: 2022-11-30 
• Deposition Author(s): Greenberg, L.R., Walsh, M.E., Kazlauskas, R.J., Pierce, C.T., Shi, K., Aihara, H., Evans, R.L.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Science Foundation (NSF, United States)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.99 Å
• R-Value Free: 0.238 
• R-Value Work: 0.184 
• R-Value Observed: 0.190 

Starting Model: experimental

Literature

to be published

Greenberg, L.R., Walsh, M.E., Kazlauskas, R.J., Pierce, C.T., Shi, K., Aihara, H., Evans, R.L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 30.26 kDa 
• Atom Count: 2,161 
• Modelled Residue Count: 255 
• Deposited Residue Count: 265 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
(S)-hydroxynitrile lyase	A	265	Hevea brasiliensis	Mutation(s): 7  Gene Names: HNL EC: 4.1.2.47
UniProt
Find proteins for P52704 (Hevea brasiliensis) Explore P52704  Go to UniProtKB:  P52704

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.99 Å
• R-Value Free: 0.238 
• R-Value Work: 0.184 
• R-Value Observed: 0.190 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.054	α = 90
b = 106.378	β = 90
c = 128.396	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-11-30 
Deposition Author(s): Greenberg, L.R., Walsh, M.E., Kazlauskas, R.J., Pierce, C.T., Shi, K., Aihara, H., Evans, R.L.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM119483
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	NIGMS R35-GM118047
National Science Foundation (NSF, United States)	United States	2039039

Revision History  

• Version 1.0: 2022-11-30
  Type: Initial release
  
• Version 1.1: 2023-10-25
  Changes: Data collection, Refinement description