8PKQ

Crystal structure of PknD-34, a repeat fragment from the M. tuberculosis PknD beta-propeller


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.194 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Fragment-based assembly of a symmetric protein scaffold

Wouters, S.M.L.Noguchi, H.Voet, A.R.D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
non-specific serine/threonine protein kinase
A, B, C
86Mycobacterium tuberculosisMutation(s): 0 
Gene Names: pknD_1pknD_2ERS007657_00042ERS007663_00011ERS007665_00696ERS007720_00884SAMEA2683035_02262
EC: 2.7.11.1
UniProt
Find proteins for A0A045HV41 (Mycobacterium tuberculosis)
Explore A0A045HV41 
Go to UniProtKB:  A0A045HV41
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A045HV41
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.194 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 95.351α = 90
b = 95.351β = 90
c = 69.829γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Research Foundation - Flanders (FWO)Belgium1S89918N
Research Foundation - Flanders (FWO)BelgiumG0F9316N
Research Foundation - Flanders (FWO)BelgiumG051917N

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-10
    Type: Initial release