8QYC

Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S

PDB DOI: https://doi.org/10.2210/pdb8QYC/pdb
EM Map EMD-18750: EMDB EMDataResource

Classification: ANTIVIRAL PROTEIN
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-10-25 Released: 2024-11-06
Deposition Author(s): Hu, H., Taylor, N.M.I.
Funding Organization(s): Novo Nordisk Foundation, Lundbeckfonden

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S

Hu, H., Taylor, N.M.I.

To be published.

Macromolecule Content

Total Structure Weight: 123.4 kDa
Atom Count: 7,198
Modelled Residue Count: 893
Deposited Residue Count: 1,080
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DEAD/DEAH box helicase	A	1,080	Escherichia coli	Mutation(s): 0 Gene Names: BF481_003650
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AGS (Subject of Investigation/LOI) Query on AGS Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C₁₀ H₁₆ N₅ O₁₂ P₃ S NLTUCYMLOPLUHL-KQYNXXCUSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-06

Deposition Author(s):

Funding Organization	Location	Grant Number
Novo Nordisk Foundation	Denmark	NNF17OC0031006
Novo Nordisk Foundation	Denmark	NNF21OC0071948
Lundbeckfonden	Denmark	R347-2020-2429

Revision History (Full details and data files)

Version 1.0: 2024-11-06
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.