Download MendeleyStructure of CXCR2 bound to CXCL1 (CXCR2-CXCL1-Go Full map)
Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.To be published.
8XWV
Structure of CXCR2 bound to CXCL1 (CXCR2-CXCL1-Go Full map)
- PDB DOI: https://doi.org/10.2210/pdb8XWV/pdb
- EM Map EMD-38743: EMDB EMDataResource
- Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
- Organism(s): Homo sapiens, Mus musculus
- Expression System: Escherichia coli, Spodoptera frugiperda
- Mutation(s): Yes
- Membrane Protein: Yes PDBTM
- Deposited: 2024-01-16 Released: 2025-01-22
- Funding Organization(s): Science and Engineering Research Board (SERB)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.07 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Starting Model: in silico
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Growth-regulated alpha protein | A [auth D], B [auth E] | 73 | Homo sapiens | Mutation(s): 0 Gene Names: CXCL1 Membrane Entity: Yes |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P09341 (Homo sapiens) Explore P09341 Go to UniProtKB: P09341 | |||||
PHAROS: P09341 GTEx: ENSG00000163739 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P09341 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| C-X-C chemokine receptor type 2 | C [auth R] | 416 | Homo sapiens | Mutation(s): 0 Gene Names: CXCR2 Membrane Entity: Yes |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25025 (Homo sapiens) Explore P25025 Go to UniProtKB: P25025 | |||||
PHAROS: P25025 GTEx: ENSG00000180871 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P25025 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanine nucleotide-binding protein G(o) subunit alpha | D [auth A] | 240 | Homo sapiens | Mutation(s): 6 Gene Names: GNAO1 EC: 3.6.5 Membrane Entity: Yes |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P09471 (Homo sapiens) Explore P09471 Go to UniProtKB: P09471 | |||||
PHAROS: P09471 GTEx: ENSG00000087258 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P09471 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | E [auth B] | 350 | Homo sapiens | Mutation(s): 0 Gene Names: GNB1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62873 (Homo sapiens) Explore P62873 Go to UniProtKB: P62873 | |||||
PHAROS: P62873 GTEx: ENSG00000078369 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P62873 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | F [auth G] | 56 | Homo sapiens | Mutation(s): 0 Gene Names: GNG2 Membrane Entity: Yes |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P59768 (Homo sapiens) Explore P59768 Go to UniProtKB: P59768 | |||||
PHAROS: P59768 GTEx: ENSG00000186469 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P59768 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Antibody fragment ScFv16 | G [auth H] | 256 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.07 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | |
| RECONSTRUCTION | cryoSPARC | 4.4 |
| RECONSTRUCTION | RELION | 4 |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-01-22 Deposition Author(s): Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Science and Engineering Research Board (SERB) | India | IPA/2020/000405 |
Revision History (Full details and data files)
- Version 1.0: 2025-01-22
Type: Initial release
