Semaphorin-5A TSR 3-4 domains in complex with sulfate
Nagy, G.N., Duman, R., Harlos, K., El Omari, K., Wagner, A., Jones, E.Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Semaphorin-5A | 125 | Homo sapiens | Mutation(s): 2  Gene Names: SEMA5A, SEMAF | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13591 (Homo sapiens) Explore Q13591  Go to UniProtKB:  Q13591 | |||||
PHAROS:  Q13591 GTEx:  ENSG00000112902  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q13591 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: Q13591-1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MAN (Subject of Investigation/LOI) Query on MAN | D [auth A], E [auth A], G [auth B], H [auth B] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N | |||
SO4 (Subject of Investigation/LOI) Query on SO4 | C [auth A], F [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 105.081 | α = 90 |
b = 29.286 | β = 100.46 |
c = 90.429 | γ = 90 |
Software Name | Purpose |
---|---|
autoPROC | data processing |
CRANK2 | phasing |
PHENIX | refinement |
Coot | model building |
XDS | data reduction |
Aimless | data scaling |
Funding Organization | Location | Grant Number |
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Medical Research Council (MRC, United Kingdom) | United Kingdom | MR/T000503/1 |