Covalent inhibitors of SARS-CoV-2 main protease
Yang, Y., Wu, D.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
3C-like proteinase nsp5 | A [auth B], B [auth A] | 306 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  EC: 3.4.22.69 | |
UniProt | |||||
Find proteins for P0DTC1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC1  Go to UniProtKB:  P0DTC1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DTC1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
X7F (Subject of Investigation/LOI) Query on X7F | D [auth A] | 5,8-bis(oxidanyl)naphthalene-1,4-dione C10 H6 O4 RQNVIKXOOKXAJQ-UHFFFAOYSA-N | |||
PEG Query on PEG | C [auth B], E [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
DMS Query on DMS | F [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 123.562 | α = 90 |
b = 80.994 | β = 90.17 |
c = 63.692 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-3000 | data scaling |
HKL-3000 | data collection |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |