Download Mendeley2C9 Fab antibody fragment against the E protein of the Yellow Fever virus
Bibby, S., Balk, J., Ting, Y.T., Coulibaly, F., Watterson, D.To be published.
9B8G
2C9 Fab antibody fragment against the E protein of the Yellow Fever virus
- PDB DOI: https://doi.org/10.2210/pdb9B8G/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus
- Mutation(s): No
- Deposited: 2024-03-29 Released: 2024-11-06
- Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.66 Å
- R-Value Free: 0.258
- R-Value Work: 0.201
- R-Value Observed: 0.203
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2C9 Fab heavy chain | A, C, E [auth H] | 230 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2C9 Fab light chain | B, D, F [auth L] | 218 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | H [auth C] I [auth C] J [auth H] K [auth H] L | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CL Query on CL | G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.66 Å
- R-Value Free: 0.258
- R-Value Work: 0.201
- R-Value Observed: 0.203
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.667 | α = 90 |
| b = 125.329 | β = 93.947 |
| c = 96.928 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-11-06 Deposition Author(s): Balk, J., Ting, Y.T., Bibby, S., Watterson, D., Coulibaly, F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Health and Medical Research Council (NHMRC, Australia) | Australia | APP1164216 |
| National Health and Medical Research Council (NHMRC, Australia) | Australia | APP2004582 |
Revision History (Full details and data files)
- Version 1.0: 2024-11-06
Type: Initial release
