9CYX

Cryo-EM structure of MRV full core


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Molecular sociology of virus-induced cellular condensates supporting reovirus assembly and replication.

Liu, X.Xia, X.Martynowycz, M.W.Gonen, T.Zhou, Z.H.

(2024) Nat Commun 15: 10638-10638

  • DOI: https://doi.org/10.1038/s41467-024-54968-7
  • Primary Citation of Related Structures:  
    9CYT, 9CYX, 9CYY

  • PubMed Abstract: 

    Virus-induced cellular condensates, or viral factories, are poorly understood high-density phases where replication of many viruses occurs. Here, by cryogenic electron tomography (cryoET) of focused ion beam (FIB) milling-produced lamellae of mammalian reovirus (MRV)-infected cells, we visualized the molecular organization and interplay (i.e., "molecular sociology") of host and virus in 3D at two time points post-infection, enabling a detailed description of these condensates and a mechanistic understanding of MRV replication within them. Expanding over time, the condensate fashions host ribosomes at its periphery, and host microtubules, lipid membranes, and viral molecules in its interior, forming a 3D architecture that supports the dynamic processes of viral genome replication and capsid assembly. A total of six MRV assembly intermediates are identified inside the condensate: star core, empty and genome-containing cores, empty and full virions, and outer shell particle. Except for star core, these intermediates are visualized at atomic resolution by cryogenic electron microscopy (cryoEM) of cellular extracts. The temporal sequence and spatial rearrangement among these viral intermediates choreograph the viral life cycle within the condensates. Together, the molecular sociology of MRV-induced cellular condensate highlights the functional advantage of transient enrichment of molecules at the right location and time for viral replication.


  • Organizational Affiliation

    Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lambda 1A [auth H],
B [auth I],
F [auth B]
1,275Mammalian orthoreovirus 3 DearingMutation(s): 0 
EC: 3.6.4.13
UniProt
Find proteins for F1ARN3 (Mammalian orthoreovirus 3)
Explore F1ARN3 
Go to UniProtKB:  F1ARN3
Entity Groups  
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UniProt GroupF1ARN3
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Outer capsid protein lambda-2C [auth A]1,288Mammalian orthoreovirus 3 DearingMutation(s): 0 
EC: 2.7.7.50 (PDB Primary Data), 2.1.1.56 (PDB Primary Data)
UniProt
Find proteins for P11079 (Reovirus type 3 (strain Dearing))
Explore P11079 
Go to UniProtKB:  P11079
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UniProt GroupP11079
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Inner capsid protein sigma-2D [auth Q],
E [auth R]
417Mammalian orthoreovirus 3 DearingMutation(s): 0 
UniProt
Find proteins for P03525 (Reovirus type 3 (strain Dearing))
Explore P03525 
Go to UniProtKB:  P03525
Entity Groups  
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UniProt GroupP03525
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI094386

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-18
    Type: Initial release