1J78
Crystallographic analysis of the human vitamin D binding protein
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1j78a1 | All alpha proteins | Serum albumin-like | Serum albumin-like | Serum albumin-like | Vitamin D binding protein | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1j78b1 | All alpha proteins | Serum albumin-like | Serum albumin-like | Serum albumin-like | Vitamin D binding protein | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Serum albumin-like | 8043418 | 3001552 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Serum albumin-like | 8043417 | 3001552 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Serum albumin-like | 8043416 | 3001552 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Serum albumin-like | 8043418 | 3001552 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Serum albumin-like | 8043416 | 3001552 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Serum albumin-like | 8043417 | 3001552 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Serum_albumin | e1j78A1 | A: alpha complex topology | X: Serum albumin-like (From Topology) | H: Serum albumin-like (From Topology) | T: Serum albumin-like | F: Serum_albumin | ECOD (1.6) |
A | VitD-bind_III | e1j78A3 | A: alpha complex topology | X: Serum albumin-like (From Topology) | H: Serum albumin-like (From Topology) | T: Serum albumin-like | F: VitD-bind_III | ECOD (1.6) |
B | Serum_albumin | e1j78B1 | A: alpha complex topology | X: Serum albumin-like (From Topology) | H: Serum albumin-like (From Topology) | T: Serum albumin-like | F: Serum_albumin | ECOD (1.6) |
B | VitD-bind_III | e1j78B3 | A: alpha complex topology | X: Serum albumin-like (From Topology) | H: Serum albumin-like (From Topology) | T: Serum albumin-like | F: VitD-bind_III | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.246.10 | Mainly Alpha | Orthogonal Bundle | Serum Albumin | Chain A, Domain 1 | CATH (4.3.0) |
B | 1.10.246.10 | Mainly Alpha | Orthogonal Bundle | Serum Albumin | Chain A, Domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09164 | Vitamin D binding protein, domain III (VitD-bind_III) | Vitamin D binding protein, domain III | Members of this family are predominantly found in Vitamin D binding protein, and adopt a multi-helical structure. They are required for formation of an actin 'clamp', allowing the protein to bind to actin [1]. | Domain | |
PF00273 | Serum albumin family (Serum_albumin) | Serum albumin family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000213 | Vitamin D-binding protein | Family | |
IPR015247 | Vitamin D binding protein, domain III | Domain | |
IPR020857 | Serum albumin, conserved site | Conserved Site | |
IPR000264 | ALB/AFP/VDB | Family | |
IPR014760 | Serum albumin, N-terminal | Domain | |
IPR020858 | Serum albumin-like | Homologous Superfamily |