Ligand validation:4RKU

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4RKU designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4RKU_CLA_B_9010	53%	6%	0.194	0.956	2.3	2.72	18	26	14	1	100%	1
4RKU_CLA_B_1235	50%	6%	0.193	0.946	2.36	2.6	20	22	7	1	100%	1
4RKU_CLA_B_1205	49%	6%	0.2	0.947	2.37	2.6	19	23	4	1	100%	1
4RKU_CLA_B_1203	48%	6%	0.194	0.951	2.47	2.65	20	21	2	1	92%	0.9231
4RKU_CLA_B_1228	48%	4%	0.168	0.949	2.54	2.97	19	24	4	1	78%	0.7846
4RKU_CLA_B_1207	46%	6%	0.193	0.929	2.38	2.63	19	24	13	1	100%	1
4RKU_CLA_1_1004	45%	7%	0.186	0.916	2.27	2.56	20	21	24	1	100%	1
4RKU_CLA_B_1226	44%	6%	0.219	0.949	2.24	2.78	19	21	3	1	100%	1
4RKU_CLA_A_1101	44%	6%	0.2	0.929	2.37	2.63	19	22	5	1	100%	1
4RKU_CLA_B_1229	43%	6%	0.217	0.941	2.37	2.59	20	22	8	1	100%	1
4RKU_CLA_B_1204	43%	5%	0.191	0.942	2.58	2.74	20	23	3	1	85%	0.8462
4RKU_CLA_4_4003	43%	8%	0.171	0.893	2.24	2.45	19	24	28	1	100%	1
4RKU_CLA_B_1220	43%	6%	0.222	0.945	2.38	2.58	20	23	8	1	100%	1
4RKU_CLA_A_1132	42%	7%	0.212	0.933	2.29	2.55	19	24	13	1	100%	1
4RKU_CLA_B_1227	41%	6%	0.206	0.924	2.24	2.73	18	23	24	1	100%	1
4RKU_CLA_B_1202	41%	6%	0.223	0.939	2.37	2.6	19	21	2	1	100%	1
4RKU_CLA_4_4012	40%	6%	0.214	0.928	2.28	2.72	18	21	18	1	100%	1
4RKU_CLA_A_1140	40%	6%	0.221	0.932	2.39	2.57	19	22	4	1	100%	1
4RKU_CLA_A_1139	38%	6%	0.209	0.914	2.38	2.56	20	22	1	1	100%	1
4RKU_CLA_B_1209	38%	4%	0.175	0.93	2.87	2.84	20	20	5	1	71%	0.7077
4RKU_CLA_B_1225	38%	7%	0.229	0.932	2.39	2.54	19	23	6	1	100%	1
4RKU_CLA_A_1102	38%	4%	0.19	0.932	2.7	2.98	20	22	6	1	77%	0.7692
4RKU_CLA_4_4015	37%	4%	0.169	0.921	2.75	2.86	18	23	13	1	71%	0.7077
4RKU_CLA_B_1201	37%	4%	0.201	0.952	2.87	2.87	20	21	1	1	71%	0.7077
4RKU_CLA_4_4013	36%	4%	0.182	0.915	2.51	3	19	23	13	1	78%	0.7846
4RKU_CLA_A_1138	36%	6%	0.232	0.926	2.38	2.57	20	23	9	1	100%	1
4RKU_CLA_B_1218	36%	5%	0.199	0.905	2.46	2.76	19	23	2	1	92%	0.9231
4RKU_CLA_1_1005	35%	5%	0.205	0.921	2.4	2.86	19	24	14	1	86%	0.8615
4RKU_CLA_B_1217	35%	4%	0.187	0.928	2.86	2.83	19	20	5	1	71%	0.7077
4RKU_CLA_A_1128	35%	7%	0.241	0.93	2.32	2.61	18	25	11	1	100%	1
4RKU_CLA_B_1239	34%	5%	0.242	0.926	2.27	2.92	17	27	7	1	100%	1
4RKU_CLA_A_1106	34%	6%	0.245	0.929	2.37	2.62	19	23	9	1	100%	1
4RKU_CLA_B_9022	33%	6%	0.246	0.928	2.43	2.55	19	29	8	1	100%	1
4RKU_CLA_B_1211	33%	6%	0.226	0.907	2.38	2.58	19	23	3	1	100%	1
4RKU_CLA_B_1238	33%	6%	0.243	0.924	2.38	2.58	20	23	3	1	100%	1
4RKU_CLA_2_2011	33%	5%	0.172	0.864	2.35	2.86	20	26	11	1	92%	0.9231
4RKU_CLA_1_1003	32%	6%	0.191	0.865	2.3	2.64	18	26	42	1	100%	1
4RKU_CLA_L_1502	32%	6%	0.227	0.901	2.33	2.62	19	22	7	1	100%	1
4RKU_CLA_2_2012	32%	7%	0.236	0.91	2.22	2.69	19	24	21	1	100%	1
4RKU_CLA_B_1208	32%	5%	0.212	0.913	2.58	2.79	20	21	5	1	85%	0.8462
4RKU_CLA_4_4009	31%	4%	0.203	0.916	2.49	3.12	18	22	9	1	77%	0.7692
4RKU_CLA_B_1221	31%	5%	0.224	0.924	2.61	2.87	19	23	6	1	83%	0.8308
4RKU_CLA_A_1130	30%	4%	0.212	0.929	2.84	2.83	19	20	17	1	71%	0.7077
4RKU_CLA_B_1206	30%	6%	0.266	0.931	2.35	2.61	19	26	13	1	100%	1
4RKU_CLA_A_9013	29%	6%	0.246	0.908	2.28	2.74	17	29	9	1	100%	1
4RKU_CLA_B_1216	29%	7%	0.241	0.9	2.36	2.52	19	23	3	1	100%	1
4RKU_CLA_B_1210	29%	6%	0.243	0.902	2.41	2.61	20	24	6	1	100%	1
4RKU_CLA_B_1230	28%	5%	0.229	0.904	2.48	2.81	19	24	4	1	89%	0.8923
4RKU_CLA_A_1105	28%	4%	0.222	0.916	2.69	2.91	20	22	2	1	78%	0.7846
4RKU_CLA_F_1301	28%	4%	0.2	0.907	2.74	2.9	18	19	2	1	69%	0.6923
4RKU_CLA_4_4011	28%	7%	0.261	0.914	2.23	2.67	18	23	6	1	100%	1
4RKU_CLA_A_1103	28%	6%	0.253	0.905	2.37	2.57	19	24	5	1	100%	1
4RKU_CLA_A_1131	28%	7%	0.291	0.944	2.26	2.64	19	24	4	1	100%	1
4RKU_CLA_1_1012	27%	4%	0.213	0.903	2.54	3	18	26	23	1	77%	0.7692
4RKU_CLA_2_2001	27%	2%	0.149	0.901	3.19	3.61	15	15	19	1	42%	0.4154
4RKU_CLA_4_4008	27%	3%	0.163	0.855	2.65	3.37	17	27	16	1	74%	0.7385
4RKU_CLA_B_1213	27%	6%	0.223	0.883	2.33	2.7	19	25	10	1	92%	0.9231
4RKU_CLA_A_1122	26%	5%	0.227	0.888	2.51	2.76	21	22	5	1	91%	0.9077
4RKU_CLA_A_9012	26%	7%	0.261	0.905	2.34	2.58	20	27	17	1	100%	1
4RKU_CLA_A_1104	26%	6%	0.275	0.919	2.36	2.62	19	22	5	1	100%	1
4RKU_CLA_B_1223	26%	6%	0.279	0.921	2.37	2.64	19	24	4	1	100%	1
4RKU_CLA_B_9023	25%	7%	0.284	0.924	2.3	2.6	20	29	7	1	100%	1
4RKU_CLA_B_1236	25%	5%	0.256	0.923	2.56	2.82	20	22	4	1	85%	0.8462
4RKU_CLA_B_1219	25%	6%	0.228	0.878	2.46	2.6	20	22	5	1	92%	0.9231
4RKU_CLA_1_1001	25%	5%	0.241	0.904	2.48	2.91	18	26	70	1	85%	0.8462
4RKU_CLA_2_2004	24%	5%	0.226	0.874	2.49	2.93	20	19	30	1	91%	0.9077
4RKU_CLA_F_1303	24%	7%	0.281	0.914	2.35	2.41	19	25	12	1	98%	0.9846
4RKU_CLA_1_1008	23%	7%	0.271	0.893	2.23	2.62	20	22	7	1	100%	1
4RKU_CLA_B_1224	22%	7%	0.287	0.903	2.37	2.56	19	22	5	1	100%	1
4RKU_CLA_2_2013	22%	7%	0.259	0.874	2.2	2.71	19	28	12	1	100%	1
4RKU_CLA_A_1125	22%	5%	0.243	0.885	2.45	2.98	19	26	15	1	85%	0.8462
4RKU_CLA_B_1240	21%	6%	0.29	0.904	2.27	2.75	18	31	16	1	100%	1
4RKU_CLA_B_1237	21%	6%	0.272	0.898	2.46	2.67	19	22	0	1	92%	0.9231
4RKU_CLA_L_1503	20%	4%	0.227	0.872	2.66	2.93	19	23	11	1	77%	0.7692
4RKU_CLA_A_1115	20%	5%	0.237	0.864	2.57	2.73	20	22	5	1	86%	0.8615
4RKU_CLA_A_1136	20%	6%	0.262	0.864	2.37	2.62	19	24	5	1	100%	1
4RKU_CLA_4_4010	19%	4%	0.233	0.871	2.58	3.13	18	27	8	1	77%	0.7692
4RKU_CLA_A_1111	19%	5%	0.268	0.877	2.46	2.74	19	23	5	1	92%	0.9231
4RKU_CLA_1_1011	19%	6%	0.277	0.871	2.19	2.91	18	27	10	1	100%	1
4RKU_CLA_B_1222	19%	6%	0.296	0.889	2.38	2.6	20	24	6	1	100%	1
4RKU_CLA_B_1231	18%	4%	0.237	0.878	2.87	2.86	19	22	3	1	71%	0.7077
4RKU_CLA_A_1116	18%	5%	0.26	0.876	2.6	2.8	20	22	2	1	83%	0.8308
4RKU_CLA_A_1119	18%	7%	0.283	0.868	2.37	2.54	19	22	3	1	100%	1
4RKU_CLA_A_1108	16%	4%	0.223	0.849	2.88	2.85	19	20	4	1	71%	0.7077
4RKU_CLA_B_1234	16%	6%	0.289	0.877	2.48	2.67	20	22	6	1	92%	0.9231
4RKU_CLA_2_2005	16%	6%	0.323	0.896	2.2	2.75	19	26	19	1	100%	1
4RKU_CLA_A_1118	16%	4%	0.258	0.878	2.83	2.97	19	22	4	1	71%	0.7077
4RKU_CLA_A_1109	16%	6%	0.308	0.876	2.37	2.62	19	24	6	1	100%	1
4RKU_CLA_4_4004	16%	7%	0.312	0.88	2.22	2.69	20	25	35	1	100%	1
4RKU_CLA_A_1121	15%	4%	0.238	0.856	2.85	2.93	20	18	1	1	71%	0.7077
4RKU_CLA_A_1127	15%	6%	0.346	0.914	2.38	2.56	20	22	4	1	100%	1
4RKU_CLA_A_1137	15%	5%	0.321	0.916	2.56	2.81	19	24	7	1	85%	0.8462
4RKU_CLA_A_1129	15%	4%	0.254	0.859	2.66	2.92	18	22	19	1	77%	0.7692
4RKU_CLA_3_3012	15%	3%	0.178	0.791	2.61	3.32	19	26	21	1	69%	0.6923
4RKU_CLA_G_1001	14%	4%	0.304	0.89	2.43	3.2	19	27	7	1	85%	0.8462
4RKU_CLA_A_1141	14%	4%	0.285	0.878	2.7	2.87	20	22	3	1	78%	0.7846
4RKU_CLA_A_1123	14%	6%	0.298	0.852	2.4	2.63	20	24	5	1	100%	1
4RKU_CLA_A_1124	14%	5%	0.3	0.882	2.59	2.78	19	23	9	1	85%	0.8462
4RKU_CLA_B_1214	14%	5%	0.329	0.9	2.48	2.76	20	23	5	1	91%	0.9077
4RKU_CLA_A_1135	14%	4%	0.288	0.876	2.67	2.93	19	23	5	0	78%	0.7846
4RKU_CLA_G_1002	13%	4%	0.249	0.846	2.68	3.04	18	25	32	1	71%	0.7077
4RKU_CLA_A_1114	13%	4%	0.292	0.89	2.9	2.85	20	19	1	1	71%	0.7077
4RKU_CLA_1_1002	13%	5%	0.309	0.875	2.52	2.91	16	24	45	1	86%	0.8615
4RKU_CLA_A_1117	13%	6%	0.39	0.93	2.39	2.55	19	24	4	1	100%	1
4RKU_CLA_A_1107	12%	4%	0.279	0.853	2.7	2.95	20	26	6	1	78%	0.7846
4RKU_CLA_F_1302	12%	4%	0.316	0.899	2.88	2.8	20	19	3	1	71%	0.7077
4RKU_CLA_A_1133	12%	4%	0.268	0.849	2.73	2.92	19	22	4	1	71%	0.7077
4RKU_CLA_A_1126	11%	6%	0.355	0.881	2.37	2.57	20	25	13	1	100%	1
4RKU_CLA_B_1215	11%	6%	0.353	0.883	2.46	2.65	19	23	2	1	92%	0.9231
4RKU_CLA_1_1009	10%	5%	0.281	0.791	2.36	2.88	20	27	52	1	100%	1
4RKU_CLA_1_1007	10%	5%	0.367	0.907	2.44	2.96	19	27	18	1	85%	0.8462
4RKU_CLA_L_1501	10%	4%	0.365	0.93	2.82	2.87	19	20	19	1	71%	0.7077
4RKU_CLA_4_4002	10%	4%	0.314	0.846	2.41	3.22	19	25	35	1	86%	0.8615
4RKU_CLA_A_1134	10%	4%	0.298	0.853	2.88	2.86	20	19	0	1	71%	0.7077
4RKU_CLA_2_2010	10%	7%	0.299	0.801	2.3	2.56	19	24	9	1	100%	1
4RKU_CLA_A_1113	10%	4%	0.298	0.85	2.88	2.85	19	19	1	1	71%	0.7077
4RKU_CLA_3_3009	9%	3%	0.264	0.805	2.77	3.17	20	25	6	1	71%	0.7077
4RKU_CLA_2_2002	8%	5%	0.322	0.814	2.34	2.88	19	25	35	1	92%	0.9231
4RKU_CLA_3_3008	8%	6%	0.255	0.719	2.25	2.72	19	22	5	1	100%	1
4RKU_CLA_2_2009	7%	4%	0.303	0.814	2.75	2.94	19	22	19	1	71%	0.7077
4RKU_CLA_2_2007	6%	5%	0.357	0.831	2.41	2.8	19	28	6	1	85%	0.8462
4RKU_CLA_4_4014	6%	4%	0.345	0.831	2.69	2.94	18	26	21	1	69%	0.6923
4RKU_CLA_H_1000	6%	4%	0.406	0.885	2.85	2.89	19	21	4	1	71%	0.7077
4RKU_CLA_3_3013	6%	4%	0.262	0.725	2.64	3.06	20	24	7	1	77%	0.7692
4RKU_CLA_A_1112	5%	4%	0.366	0.839	2.88	2.85	20	20	3	1	71%	0.7077
4RKU_CLA_2_2014	5%	4%	0.233	0.701	2.65	3.21	19	23	12	1	69%	0.6923
4RKU_CLA_3_3011	4%	4%	0.308	0.751	2.76	3.03	19	21	20	1	71%	0.7077
4RKU_CLA_J_1302	4%	6%	0.331	0.71	2.48	2.63	19	22	1	1	94%	0.9385
4RKU_CLA_J_6014	3%	6%	0.252	0.607	2.46	2.66	20	21	1	1	94%	0.9385
4RKU_CLA_1_1010	3%	7%	0.407	0.746	2.2	2.62	19	21	7	1	100%	1
4RKU_CLA_3_3010	3%	4%	0.309	0.676	2.5	3.08	18	28	6	1	80%	0.8
4RKU_CLA_A_1110	3%	5%	0.372	0.731	2.55	2.76	19	24	2	1	85%	0.8462
4RKU_CLA_2_2003	3%	6%	0.292	0.616	2.31	2.85	21	24	19	1	100%	1
4RKU_CLA_B_1212	3%	4%	0.493	0.868	2.88	2.84	19	21	2	1	71%	0.7077
4RKU_CLA_3_3001	2%	6%	0.38	0.662	2.34	2.7	20	24	21	1	100%	1
4RKU_CLA_3_3005	2%	4%	0.367	0.659	2.77	2.92	19	20	4	1	69%	0.6923
4RKU_CLA_4_4001	1%	6%	0.563	0.801	2.32	2.64	19	26	47	1	100%	1
4RKU_CLA_2_2006	1%	5%	0.302	0.536	2.49	2.85	19	22	16	1	88%	0.8769
4RKU_CLA_4_4006	1%	5%	0.331	0.535	2.16	3.14	18	31	15	1	100%	1
4RKU_CLA_A_1120	1%	4%	0.516	0.763	2.88	2.83	19	19	2	1	71%	0.7077
4RKU_CLA_A_1142	1%	4%	0.311	0.552	2.72	2.96	17	21	0	1	68%	0.6769
4RKU_CLA_3_3002	1%	5%	0.52	0.731	2.59	2.88	19	24	1	1	85%	0.8462
4RKU_CLA_4_4007	1%	7%	0.385	0.562	2.28	2.62	19	20	8	1	100%	1
4RKU_CLA_4_4005	1%	3%	0.324	0.553	2.61	3.42	18	27	38	1	69%	0.6923
4RKU_CLA_J_6015	1%	5%	0.306	0.487	2.55	2.81	20	23	7	1	85%	0.8462
4RKU_CLA_2_2008	1%	6%	0.474	0.597	2.3	2.82	19	28	10	1	100%	1
4RKU_CLA_3_3017	0%	4%	0.487	0.571	2.75	3.02	18	19	5	1	69%	0.6923
4RKU_CLA_3_3003	0%	5%	0.578	0.616	2.43	2.81	19	24	10	1	92%	0.9231
4RKU_CLA_3_3006	0%	6%	0.492	0.511	2.39	2.55	20	22	2	1	100%	1
4RKU_CLA_1_1006	0%	4%	0.509	0.55	2.73	3.12	20	23	56	1	72%	0.7231
4RKU_CLA_1_1013	0%	6%	0.719	0.66	2.23	2.77	19	28	46	1	100%	1
4RKU_CLA_3_3004	0%	4%	0.581	0.534	2.75	2.91	18	19	0	1	69%	0.6923
4RKU_CLA_3_3014	0%	4%	0.664	0.53	2.68	3.14	17	21	4	1	69%	0.6923
4RKU_CLA_1_1014	0%	4%	0.708	0.525	2.65	3.03	18	20	27	1	69%	0.6923
4RKU_CLA_A_1143	0%	4%	0.854	0.524	2.76	2.88	19	19	0	1	71%	0.7077
4RKU_CLA_3_3016	0%	4%	0.804	0.414	2.78	2.88	19	20	0	1	69%	0.6923
4RKU_CLA_3_3015	0%	4%	1.248	0.31	2.76	2.89	19	19	0	1	69%	0.6923
5L8R_CLA_B_832	74%	20%	0.122	0.971	1.38	1.98	6	15	6	1	89%	0.8923
7DKZ_CLA_A_808	72%	27%	0.153	0.977	1.36	1.59	8	11	4	1	100%	1
4XK8_CLA_b_839	59%	7%	0.179	0.963	2.1	2.71	16	23	0	1	100%	1
6ZXS_CLA_1_5012	58%	15%	0.12	0.952	1.62	2.11	9	13	2	1	71%	0.7077
4Y28_CLA_B_1203	48%	7%	0.221	0.964	2.33	2.6	19	22	3	1	100%	1
5V2C_CLA_B_604	99%	14%	0.049	0.986	1.64	2.25	13	20	0	1	100%	1
7YQ7_CLA_D_401	98%	8%	0.059	0.979	2.09	2.56	19	28	0	0	100%	1
5B66_CLA_D_402	98%	11%	0.061	0.981	1.9	2.23	16	21	0	0	100%	1
8OV5_CLA_O_601	97%	33%	0.065	0.983	1.45	1.23	8	4	0	0	100%	1
5ZZN_CLA_A_406	97%	15%	0.064	0.979	1.65	2.13	17	21	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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4RKU

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4RKU designated by the RCSB