4TNJ | pdb_00004tnj


DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)

DGD is a Ligand Of Interest in 4TNJ designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4TNJ_DGD_c_516Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4TNJ_DGD_c_516Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4TNJ_DGD_c_516Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4TNJ_DGD_c_516 14% 39% 0.305 0.8720.92 1.45 1 120094%1
4TNJ_DGD_C_516 13% 39% 0.288 0.8450.91 1.44 1 120094%1
4TNJ_DGD_B_620 8% 42% 0.331 0.8370.9 1.34 1 80088%1
4TNJ_DGD_c_515 7% 42% 0.365 0.860.95 1.28 1 60080%1
4TNJ_DGD_c_517 6% 41% 0.35 0.7960.88 1.4 - 1000100%1
4TNJ_DGD_C_515 6% 42% 0.36 0.8310.98 1.27 2 60080%1
4TNJ_DGD_C_517 6% 41% 0.336 0.7680.88 1.41 1 1000100%1
4TNJ_DGD_b_624 3% 42% 0.402 0.7640.91 1.33 1 60088%1
4TNJ_DGD_a_411 2% 40% 0.438 0.730.94 1.39 1 70085%1
4TNJ_DGD_A_408 2% 40% 0.446 0.7110.93 1.41 - 70085%1
4TNJ_DGD_b_601 1% 39% 0.47 0.7161.06 1.32 3 70079%1
4TNJ_DGD_B_625 1% 39% 0.564 0.7621.06 1.32 3 70079%1
4TNJ_DGD_D_409 0% 42% 0.814 0.7020.91 1.33 - 90095%1
4TNJ_DGD_d_408 0% 42% 0.773 0.6620.92 1.34 2 90095%1
5GTI_DGD_h_103 96% 52% 0.05 0.9670.89 0.96 3 30094%1
5V2C_DGD_C_516 95% 43% 0.067 0.9830.89 1.29 5 100094%1
5WS6_DGD_h_103 92% 53% 0.065 0.9680.86 0.96 3 30094%1
3WU2_DGD_C_518 92% 45% 0.063 0.9650.79 1.31 3 90094%1
7YQ7_DGD_C_518 87% 51% 0.084 0.9670.83 1.07 3 50094%1
7M78_DGD_L_207 91% 40% 0.082 0.970.93 1.4 2 1440100%1