5E7C | pdb_00005e7c


SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

SQD is a Ligand Of Interest in 5E7C designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5E7C_SQD_a_612Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5E7C_SQD_a_612Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5E7C_SQD_a_612Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5E7C_SQD_a_612 13% 41% 0.31 0.8481.05 1.22 3 600100%1
5E7C_SQD_b_601 9% 41% 0.324 0.8141.05 1.22 3 600100%1
5E7C_SQD_B_623 8% 36% 0.301 0.781.07 1.44 4 900100%1
5E7C_SQD_X_101 4% 33% 0.388 0.8021.21 1.45 3 70080%1
5E7C_SQD_A_611 3% 36% 0.409 0.7540.98 1.53 3 1100100%1
5E7C_SQD_b_602 3% 36% 0.42 0.7561.08 1.44 4 900100%1
5E7C_SQD_x_101 1% 32% 0.495 0.7261.21 1.46 3 70080%1
5E7C_SQD_a_610 1% 36% 0.502 0.6920.99 1.53 3 1100100%1
5V2C_SQD_a_413 94% 21% 0.075 0.9761.12 2.14 4 1200100%1
5GTI_SQD_A_409 91% 29% 0.066 0.950.98 1.84 3 1300100%1
5WS6_SQD_A_411 87% 32% 0.084 0.9540.88 1.78 2 1200100%1
5B66_SQD_a_409 79% 23% 0.091 0.9361.01 2.11 4 1100100%1
3WU2_SQD_A_412 78% 25% 0.089 0.9320.86 2.15 2 1700100%1
6W1V_SQD_A_409 78% 25% 0.089 0.9371.02 2.02 4 160096%1