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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Richard, S.B."

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Homo sapiens (17)
	Brassica juncea (4)
	Haloarcula marismortui (4)
	Escherichia coli K-12 (3)
	Streptomyces sp. CL190 (3)
	Escherichia coli (2)
	Streptomyces sp. (1)

Taxonomy

	Eukaryota (21)
	Bacteria (9)
	Archaea (4)

Experimental Method

X-RAY DIFFRACTION (34)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (16)
	2.0 - 2.5 (10)
	2.5 - 3.0 (7)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (9)
	2015 - 2019 (17)

Enzyme Classification Name

	Transferases (7)
	Oxidoreductases (4)
	Lyases (2)

Symmetry Type

	Asymmetric (22)
	Cyclic (9)
	Dihedral (4)

SCOP Classification

	All alpha proteins (17)
	Alpha and beta proteins (a+b) (10)
	Alpha and beta proteins (a/b) (7)

AllSelected

1 to 25 of 34 Structures

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1D3A \| pdb_00001d3a	Download File View File

CRYSTAL STRUCTURE OF THE WILD TYPE HALOPHILIC MALATE DEHYDROGENASE IN THE APO FORM

Richard, S.B., Madern, D., Garcin, E., Zaccai, G.

(2000) Biochemistry 39: 992-1000

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Haloarcula marismortui
Macromolecule	HALOPHILIC MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NA

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1I52 \| pdb_00001i52	Download File View File

CRYSTAL STRUCTURE OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS

Richard, S.B., Bowman, M.E., Kwiatkowski, W., Kang, I., Chow, C., Lillo, M., Cane, D.E., Noel, J.P.

(2001) Nat Struct Biol 8: 641-648

Released	2001-07-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL SYNTHASE (protein)
Unique Ligands	CA, CTP, MG

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1INI \| pdb_00001ini	Download File View File

CRYSTAL STRUCTURE OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHETASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS, COMPLEXED WITH CDP-ME AND MG2+

Richard, S.B., Bowman, M.E., Kwiatkowski, W., Kang, I., Chow, C., Lillo, A., Cane, D.E., Noel, J.P.

(2001) Nat Struct Biol 8: 641-648

Released	2001-11-14
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Escherichia coli K-12
Macromolecule	4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL SYNTHETASE (protein)
Unique Ligands	CDM, MG

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1INJ \| pdb_00001inj	Download File View File

CRYSTAL STRUCTURE OF THE APO FORM OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHETASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS

Richard, S.B., Bowman, M.E., Kwiatkowski, W., Kang, I., Chow, C., Lillo, A., Cane, D.E., Noel, J.P.

(2001) Nat Struct Biol 8: 641-648

Released	2001-07-11
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli K-12
Macromolecule	4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL SYNTHETASE (protein)
Unique Ligands	CA

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1KNJ \| pdb_00001knj	Download File View File

Co-Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate Synthase (ispF) from E. coli Involved in Mevalonate-Independent Isoprenoid Biosynthesis, Complexed with CMP/MECDP/Mn2+

Richard, S.B., Ferrer, J.L., Bowman, M.E., Lillo, A.M., Tetzlaff, C.N., Cane, D.E., Noel, J.P.

(2002) J Biological Chem 277: 8667-8672

Released	2002-06-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, CDI, MN

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1KNK \| pdb_00001knk	Download File View File

Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate Synthase (ispF) from E. coli involved in Mevalonate-Independent Isoprenoid Biosynthesis

Richard, S.B., Ferrer, J.L., Bowman, M.E., Lillo, A.M., Tetzlaff, C.N., Cane, D.E., Noel, J.P.

(2002) J Biological Chem 277: 8667-8672

Released	2002-06-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	MN

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1O6Z \| pdb_00001o6z	Download File View File

1.95 A resolution structure of (R207S,R292S) mutant of malate dehydrogenase from the halophilic archaeon Haloarcula marismortui (holo form)

Irimia, A., Ebel, C., Madern, D., Richard, S.B., Cosenza, L.W., Zaccai, G., Vellieux, F.M.D.

(2003) J Mol Biology 326: 859

Released	2003-02-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Haloarcula marismortui
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NAD

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1ZB6 \| pdb_00001zb6	Download File View File

Co-Crystal Structure of ORF2 an Aromatic Prenyl Transferase from Streptomyces sp. strain cl190 complexed with GSPP and 1,6-dihydroxynaphtalene

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces sp.
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	DIN, GST, MG, NO3

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1ZCW \| pdb_00001zcw	Download File View File

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GPP

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Streptomyces sp. CL190
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	GPP, MG, NO3

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1ZDW \| pdb_00001zdw	Download File View File

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GSPP and Flaviolin

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Streptomyces sp. CL190
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	FLV, GST, MG, NO3

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1ZDY \| pdb_00001zdy	Download File View File

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with TAPS

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Streptomyces sp. CL190
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	T3A

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2F82 \| pdb_00002f82	Download File View File

HMG-CoA synthase from Brassica juncea in the apo-form

Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P.

(2006) Proc Natl Acad Sci U S A 103: 11491-11496

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Brassica juncea
Macromolecule	HMG-CoA synthase (protein)

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2F9A \| pdb_00002f9a	Download File View File

HMG-CoA synthase from Brassica juncea in complex with F-244

Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P.

(2006) Proc Natl Acad Sci U S A 103: 11491-11496

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Brassica juncea
Macromolecule	3-Hydroxy-3-methylglutaryl coenzyme A synthase 1 (protein)
Unique Ligands	F24

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2FA0 \| pdb_00002fa0	Download File View File

HMG-CoA synthase from Brassica juncea in complex with HMG-CoA and covalently bound to HMG-CoA

Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P.

(2006) Proc Natl Acad Sci U S A 103: 11491-11496

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Brassica juncea
Macromolecule	HMG-CoA synthase (protein)
Unique Ligands	HMG

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2FA3 \| pdb_00002fa3	Download File View File

HMG-CoA synthase from Brassica juncea in complex with acetyl-CoA and acetyl-cys117.

Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P.

(2006) Proc Natl Acad Sci U S A 103: 11491-11496

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Brassica juncea
Macromolecule	HMG-CoA synthase (protein)
Unique Ligands	ACO

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2HLP \| pdb_00002hlp	Download File View File

CRYSTAL STRUCTURE OF THE E267R MUTANT OF A HALOPHILIC MALATE DEHYDROGENASE IN THE APO FORM

Richard, S.B., Madern, D., Garcin, E., Zaccai, G.

(2000) Biochemistry 39: 992-1000

Released	2000-02-04
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Haloarcula marismortui
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NA

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2X0R \| pdb_00002x0r	Download File View File

R207S, R292S Mutant of Malate Dehydrogenase from the Halophilic Archeon Haloarcula marismortui (HoloForm)

Irimia, A., Ebel, C., Vellieux, F.M.D., Richard, S.B., Cosenza, L.W., Zaccai, G., Madern, D.

(2003) J Mol Biology 326: 859-873

Released	2009-12-29
Method	X-RAY DIFFRACTION 2.915 Å
Organisms	Haloarcula marismortui
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NA, NAD

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5U3Q \| pdb_00005u3q	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 1

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7UJ, B7G, CL, K, PEG, PGO

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5U3R \| pdb_00005u3r	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 2

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7V1, B7G, PEG, PGO

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5U3S \| pdb_00005u3s	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 3

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7V4, B7G, K, PEG, PGO

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5U3T \| pdb_00005u3t	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 4

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7UY, B7G, PEG, PGE, PGO

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5U3U \| pdb_00005u3u	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 5

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7TV, B7G, PEG, PGO

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5U3V \| pdb_00005u3v	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 6

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7TY, B7G, PEG, PGO

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5U3W \| pdb_00005u3w	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 7

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7U1, B7G, PEG, PGO

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5U3X \| pdb_00005u3x	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 8

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7U4, B7G, PEG, PGO

1 to 25 of 34 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1D3A | pdb_00001d3a

1I52 | pdb_00001i52

1INI | pdb_00001ini

1INJ | pdb_00001inj

1KNJ | pdb_00001knj

1KNK | pdb_00001knk

1O6Z | pdb_00001o6z

1ZB6 | pdb_00001zb6

1ZCW | pdb_00001zcw

1ZDW | pdb_00001zdw

1ZDY | pdb_00001zdy

2F82 | pdb_00002f82

2F9A | pdb_00002f9a

2FA0 | pdb_00002fa0

2FA3 | pdb_00002fa3

2HLP | pdb_00002hlp

2X0R | pdb_00002x0r

5U3Q | pdb_00005u3q

5U3R | pdb_00005u3r

5U3S | pdb_00005u3s

5U3T | pdb_00005u3t

5U3U | pdb_00005u3u

5U3V | pdb_00005u3v

5U3W | pdb_00005u3w

5U3X | pdb_00005u3x