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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Caruso, D."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

Homo sapiens (30)

Taxonomy

Eukaryota (30)

Experimental Method

X-RAY DIFFRACTION (30)

Polymer Entity Type

Protein (30)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (1)
	2.0 - 2.5 (14)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (8)
	2015 - 2019 (9)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

	Cyclic (23)
	Asymmetric (15)

SCOP Classification

	All alpha proteins (24)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 30 Structures

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2I4J \| pdb_00002i4j	Download File View File

Crystal structure of the complex between PPARgamma and the agonist LT160 (ureidofibrate derivative)

Pochetti, G., Mazza, F.

(2007) J Biological Chem 282: 17314-17324

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DRJ

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2I4P \| pdb_00002i4p	Download File View File

Crystal structure of the complex between PPARgamma and the partial agonist LT127 (ureidofibrate derivative). Structure obtained from crystals of the apo-form soaked for 30 days.

Pochetti, G., Mazza, F.

(2007) J Biological Chem 282: 17314-17324

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DRH

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2I4Z \| pdb_00002i4z	Download File View File

Crystal structure of the complex between PPARgamma and the partial agonist LT127 (ureidofibrate derivative). This structure has been obtained from crystals soaked for 6 hours.

Pochetti, G., Mazza, F.

(2007) J Biological Chem 282: 17314-17324

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DRH

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3B3K \| pdb_00003b3k	Download File View File

Crystal structure of the complex between PPARgamma and the full agonist LT175

Pochetti, G., Montanari, R., Mazza, F., Loiodice, F., Fracchiolla, G., Crestani, M., Godio, C.

(2008) J Med Chem 51: 7768-7776

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	LRG

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3CDP \| pdb_00003cdp	Download File View File

Crystal structure of PPAR-gamma LBD complexed with a partial agonist, analogue of clofibric acid

Pochetti, G., Montanari, R., Mazza, F.

(2012) Bioorg Med Chem 20: 2141-2151

Released	2009-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	YRG

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3CDS \| pdb_00003cds	Download File View File

Crystal structure of the complex between PPAR-gamma and the agonist LT248 (clofibric acid analogue)

Pochetti, G., Montanari, R., Mazza, F.

(2008) J Med Chem 51: 7768-7776

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	GRR

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3D6D \| pdb_00003d6d	Download File View File

Crystal Structure of the complex between PPARgamma LBD and the LT175(R-enantiomer)

Pochetti, G., Montanari, R.

(2008) J Med Chem 51: 7768-7776

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	LRG

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3HO0 \| pdb_00003ho0	Download File View File

Crystal structure of the PPARgamma-LBD complexed with a new aryloxy-3phenylpropanoic acid

Pochetti, G., Montanari, R., Mazza, F., Loiodice, F., Fracchiolla, G., Laghezza, A., Lavecchia, A., Novellino, E.

(2009) J Med Chem 52: 6382-6393

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DKD

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3HOD \| pdb_00003hod	Download File View File

Crystal structure of the PPARgamma-LBD complexed with a new aryloxy-3phenylpropanoic acid

Pochetti, G., Montanari, R., Mazza, F., Loiodice, F., Fracchiolla, G., Laghezza, A., Lavecchia, A., Novellino, E.

(2009) J Med Chem 52: 6382-6393

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	ZZH

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3R8I \| pdb_00003r8i	Download File View File

Crystal Structure of PPARgamma with an achiral ureidofibrate derivative (RT86)

Pochetti, G., Montanari, R., Loiodice, F., Laghezza, A., Fracchiolla, G., Lavecchia, A., Novellino, E., Crestani, M.

(2012) J Med Chem 55: 37-54

Released	2012-01-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	XCX

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4E4K \| pdb_00004e4k	Download File View File

Crystal Structure of PPARgamma with the ligand JO21

Pochetti, G., Montanari, R., Loiodice, F., Fracchiolla, G., Laghezza, A., Carbonara, G., Piemontese, L., Lavecchia, A., Novellino, E.

(2013) J Med Chem 56: 60-72

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	RRG

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4E4Q \| pdb_00004e4q	Download File View File

Crystal structure of PPARgamma with the ligand FS214

Pochetti, G., Montanari, R., Loiodice, F., Fracchiolla, G., Laghezza, A., Carbonara, G., Piemontese, L., Lavecchia, A., Novellino, E.

(2013) J Med Chem 56: 60-72

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	RRH

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4JAZ \| pdb_00004jaz	Download File View File

Crystal structure of the complex between PPARgamma LBD and trans-resveratrol

Pochetti, G., Capelli, D., Montanari, R., Calleri, E., Moaddel, R., Temporini, C.

(2014) Chembiochem 15: 1154-1160

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	STL

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4JL4 \| pdb_00004jl4	Download File View File

Crystal structure of the complex between PPARgamma LBD and the ligand LJ570 [(2S)-3-(biphenyl-4-yl)-2-(biphenyl-4-yloxy)propanoic acid]

Pochetti, G., Montanari, R., Capelli, D.

(2018) J Med Chem 61: 8282-8298

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	AXY

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4L96 \| pdb_00004l96	Download File View File

Structure of the complex between the F360L PPARgamma mutant and the ligand LT175 (space group I222)

Pochetti, G., Montanari, R., Capelli, D., Chiaraluce, R., Consalvi, V., Pasquo, A., Lori, C., Laghezza, A., Loiodice, F.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1965-1976

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	LRG

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4L98 \| pdb_00004l98	Download File View File

Crystal structure of the complex of F360L PPARgamma mutant with the ligand LT175

Pochetti, G., Montanari, R., Consalvi, V., Chiaraluce, R., Pasquo, A., Capelli, D., Loiodice, F., Laghezza, A., Lori, C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1965-1976

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	LRG

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4O8F \| pdb_00004o8f	Download File View File

Crystal Structure of the complex between PPARgamma mutant R357A and rosiglitazone

Pochetti, G., Montanari, R., Capelli, D., Chiaraluce, R., Consalvi, V., Lori, C., Loiodice, F., Laghezza, A., Pasquo, A., Cervoni, L., Aschi, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1965-1976

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	BRL

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4PVU \| pdb_00004pvu	Download File View File

Crystal structure of the complex between PPARgamma-LBD and the R enantiomer of Mbx-102 (Metaglidasen)

Pochetti, G., Montanari, R., Capelli, D., Loiodice, F., Laghezza, A., Piemontese, L., Lavecchia, A.

(2015) ChemMedChem 10: 555-565

Released	2015-02-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	MGZ

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4PWL \| pdb_00004pwl	Download File View File

Crystal structure of the complex between PPARgamma-LBD and the S enantiomer of Mbx-102 (Metaglidasen)

Pochetti, G., Montanari, R., Capelli, D., Loiodice, F., Laghezza, A., Lavecchia, A., Piemontese, L.

(2015) ChemMedChem 10: 555-565

Released	2015-02-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	MSZ

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4QKZ \| pdb_00004qkz	Download File View File

X-ray structure of the catalytic domain of MMP-8 with the inhibitor ML115

Pochetti, G., Montanari, R., Capelli, D., Tortorella, P.

(2020) Pharmaceuticals (Basel) 13:

Released	2015-06-17
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	CA, MES, QZK, ZN

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5F9B \| pdb_00005f9b	Download File View File

X-ray crystal structure of PPARgamma in the complex with caulophyllogenin

Pochetti, G., Montanari, R., Capelli, D.

(2016) Sci Rep 6: 27658-27658

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	5VN

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5H8X \| pdb_00005h8x	Download File View File

Crystal structure of the complex MMP-8/BF471 (catechol inhibitor)

Pochetti, G., Montanari, R., Capelli, D., Tortorella, P.

(2016) J Enzyme Inhib Med Chem 31: 25-37

Released	2016-11-02
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	5XT, 7FY, CA, MES, ZN

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5HYK \| pdb_00005hyk	Download File View File

Crystal structure of the complex PPARalpha/AL26-29

Pochetti, G., Montanari, R., Capelli, D., Loiodice, F., Laghezza, A., Lavecchia, A.

(2016) Sci Rep 6: 34792-34792

Released	2016-11-23
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor alpha (protein)
Unique Ligands	65W

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5HZC \| pdb_00005hzc	Download File View File

Crystal structure of the complex PPARgamma/AL26-29

Pochetti, G., Montanari, R., Capelli, D., Loiodice, F., Laghezza, A., Lavecchia, A.

(2016) Sci Rep 6: 34792-34792

Released	2016-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	65W

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5LSG \| pdb_00005lsg	Download File View File

PPARgamma complex with the betulinic acid

Pochetti, G., Montanari, R., Capelli, D., Loiodice, F., Laghezza, A., Calleri, E., Paiardini, A.

(2017) Sci Rep 7: 5777-5777

Released	2017-08-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	QZQ

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2I4J | pdb_00002i4j

2I4P | pdb_00002i4p

2I4Z | pdb_00002i4z

3B3K | pdb_00003b3k

3CDP | pdb_00003cdp

3CDS | pdb_00003cds

3D6D | pdb_00003d6d

3HO0 | pdb_00003ho0

3HOD | pdb_00003hod

3R8I | pdb_00003r8i

4E4K | pdb_00004e4k

4E4Q | pdb_00004e4q

4JAZ | pdb_00004jaz

4JL4 | pdb_00004jl4

4L96 | pdb_00004l96

4L98 | pdb_00004l98

4O8F | pdb_00004o8f

4PVU | pdb_00004pvu

4PWL | pdb_00004pwl

4QKZ | pdb_00004qkz

5F9B | pdb_00005f9b

5H8X | pdb_00005h8x

5HYK | pdb_00005hyk

5HZC | pdb_00005hzc

5LSG | pdb_00005lsg