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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Paterson, N.G."

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Search Summary

This query matches 179 Structures.

Refinements

Structure Determination Methodology

experimental (179)

Scientific Name of Source Organism

	Homo sapiens (125)
	Severe acute respiratory syndrome coronavirus 2 (90)
	Lama glama (13)
	Escherichia coli (11)
	Pseudomonas aeruginosa PAO1 (10)
	synthetic construct (8)
	Tequatrovirus T4 (5)
	Mycobacterium tuberculosis H37Rv (4)
	Staphylococcus aureus (3)
	Streptococcus pneumoniae TIGR4 (3)

More...

Taxonomy

	Eukaryota (132)
	Riboviria (90)
	Bacteria (44)
	other sequences (8)
	Duplodnaviria (5)

Experimental Method

	X-RAY DIFFRACTION (149)
	ELECTRON MICROSCOPY (30)

Polymer Entity Type

	Protein (176)
	DNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (7)
	1.5 - 2.0 (45)
	2.0 - 2.5 (37)
	2.5 - 3.0 (34)
	3.0 - 3.5 (21)
	3.5 - 4.0 (19)
	4.0 - 4.5 (8)
	> 4.5 (7)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (11)
	2015 - 2019 (7)
	2020 - 2024 (149)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (49)
	Oxidoreductases (4)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (9)
	MemProtMD (3)
	OPM (3)
	mpstruc (7)

Symmetry Type

	Asymmetric (155)
	Cyclic (18)
	Dihedral (6)

SCOP Classification

	All beta proteins (23)
	Alpha and beta proteins (a+b) (22)
	Artifacts (6)
	Alpha and beta proteins (a/b) (5)

AllSelected

1 to 25 of 179 Structures

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2HEU \| pdb_00002heu	Download File View File

Atomic resolution structure of apo-form of RafE from Streptococcus pneumoniae

Paterson, N.G., Riboldi-Tunnicliffe, A., Mitchell, T.J., Isaacs, N.W.

To be published

Released	2007-06-05
Method	X-RAY DIFFRACTION 1.04 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Sugar ABC transporter, sugar-binding protein (protein)
Unique Ligands	CL, NA, TRS

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2HFB \| pdb_00002hfb	Download File View File

Crystal structure of selenomethionine-labelled RafE from Streptococcus pneumoniae

Paterson, N.G., Riboldi-Tunnicliffe, A., Mitchell, T.J., Isaacs, N.W.

To be published

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	Sugar ABC transporter, sugar-binding protein (protein)
Unique Ligands	CL

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2HQ0 \| pdb_00002hq0	Download File View File

Structure of RafE from Streptococcus pneumoniae

Paterson, N.G., Riboldi-Tunnicliffe, A., Mitchell, T.J., Isaacs, N.W.

To be published

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	Sugar ABC transporter, sugar-binding protein (protein)
Unique Ligands	ACT, NA

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2I58 \| pdb_00002i58	Download File View File

Crystal Structure of RafE from Streptococcus pneumoniae complexed with raffinose

Paterson, N.G., Riboldi-Tunnicliffe, A., Mitchell, T.J., Isaacs, N.W.

To be published

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	Sugar ABC transporter, sugar-binding protein (protein)
Unique Ligands	CL
Unique branched monosaccharides	FRU, GLA, GLC

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2XE4 \| pdb_00002xe4	Download File View File

Structure of Oligopeptidase B from Leishmania major

McLuskey, K., Paterson, N.G., Bland, N.D., Mottram, J.C., Isaacs, N.W.

(2010) J Biological Chem 285: 39249

Released	2010-10-06
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Actinomycetes Leishmania major
Macromolecule	ANTIPAIN (protein) OLIGOPEPTIDASE B (protein)
Unique Ligands	CL, GOL, NA, PGO, PGR, PO4

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3HR6 \| pdb_00003hr6	Download File View File

Structure of the Corynebacterium diphtheriae major pilin SpaA points to a modular pilus assembly stabilizing isopeptide bonds

Kang, H.J., Paterson, N.G., Gaspar, A.H., Ton-That, H., Baker, E.N.

(2009) Proc Natl Acad Sci U S A 106: 16967-16971

Released	2009-09-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Putative surface-anchored fimbrial subunit (protein)
Unique Ligands	CA, IOD

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3HTL \| pdb_00003htl	Download File View File

Structure of the Corynebacterium diphtheriae major pilin SpaA points to a modular pilus assembly with stabilizing isopeptide bonds

Kang, H.J., Paterson, N.G., Gaspar, A.H., Ton-That, H., Baker, E.N.

(2009) Proc Natl Acad Sci U S A 106: 16967-16971

Released	2009-09-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Putative surface-anchored fimbrial subunit (protein)
Unique Ligands	CA, NA

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3RPK \| pdb_00003rpk	Download File View File

Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae

Paterson, N.G., Baker, E.N.

(2011) PLoS One 6: e22095-e22095

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Backbone pilus subunit (protein)

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4C0Z \| pdb_00004c0z	Download File View File

The N-terminal domain of the Streptococcus pyogenes pilus tip adhesin Cpa

Linke-Winnebeck, C., Paterson, N., Baker, E.N.

(2014) J Biological Chem 289: 177

Released	2013-11-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pyogenes
Macromolecule	ANCILLARY PROTEIN 2 (protein)
Unique Ligands	CL, GOL, PO4, SPD

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4HSQ \| pdb_00004hsq	Download File View File

Crystal Structure of Domains D2 and D3 of the Major Pilin SpaD from Corynebacterium diphtheriae

Paterson, N.G., Kang, H.J., Baker, E.N.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1190-1201

Released	2013-11-13
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Corynebacterium diphtheriae NCTC 13129
Macromolecule	Putative fimbrial subunit (protein)
Unique Ligands	CA

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4HSS \| pdb_00004hss	Download File View File

Structure of the Full-Length Major Pilin SpaD from Corynebacterium diphtheriae

Paterson, N.G., Kang, H.J., Baker, E.N.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1190-1201

Released	2013-11-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Corynebacterium diphtheriae NCTC 13129
Macromolecule	Putative fimbrial subunit (protein)
Unique Ligands	CA

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4IDM \| pdb_00004idm	Download File View File

Crystal structure of the Delta-pyrroline-5-carboxylate dehydrogenase from Mycobacterium tuberculosis

Lagautriere, T., Bashiri, G., Baker, E.N.

(2014) Acta Crystallogr D Biol Crystallogr 70: 968-980

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase (protein)

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4IDS \| pdb_00004ids	Download File View File

Crystal structure of the Delta-pyrroline-5-carboxylate dehydrogenase from Mycobacterium tuberculosis

Lagautriere, T., Bashiri, G., Baker, E.N.

(2014) Acta Crystallogr D Biol Crystallogr 70: 968-980

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase (protein)

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4IHI \| pdb_00004ihi	Download File View File

Crystal structure of the Delta-pyrroline-5-carboxylate dehydrogenase from Mycobacterium tuberculosis bound with NAD

Lagautriere, T., Bashiri, G., Baker, E.N.

(2014) Acta Crystallogr D Biol Crystallogr 70: 968-980

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase (protein)
Unique Ligands	NAD

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4JDC \| pdb_00004jdc	Download File View File

Crystal structure of the Delta-pyrroline-5-carboxylate dehydrogenase from Mycobacterium tuberculosis

Lagautriere, T., Bashiri, G., Baker, E.N.

(2014) Acta Crystallogr D Biol Crystallogr 70: 968-980

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	1-pyrroline-5-carboxylate dehydrogenase (protein)
Unique Ligands	NAD

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4N4R \| pdb_00004n4r	Download File View File

Structure basis of lipopolysaccharide biogenesis

Dong, H., Xiang, Q., Wang, Z., Paterson, N.G., He, C., Zhang, Y., Wang, W., Dong, C.

(2014) Nature 511: 52-56

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	LPS-assembly lipoprotein LptE (protein) LPS-assembly protein LptD (protein)
Unique Ligands	CAC, ZN

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4TKO \| pdb_00004tko	Download File View File

Structure of the periplasmic adaptor protein EmrA

Hinchliffe, P., Greene, N.P., Paterson, N.G., Crow, A., Hughes, C., Koronakis, V.

(2014) FEBS Lett 588: 3147-3153

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	EmrA (protein)
Unique Ligands	IPA, MG

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5D0O \| pdb_00005d0o	Download File View File

BamABCDE complex, outer membrane beta barrel assembly machinery entire complex

Gu, Y., Paterson, N., Zeng, Y., Dong, H., Wang, W., Dong, C.

(2016) Nature 531: 47-52

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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5D0Q \| pdb_00005d0q	Download File View File

BamACDE complex, outer membrane beta-barrel assembly machinery (BAM) complex

Gu, Y., Paterson, N., Zeng, Y., Dong, H., Wang, W., Dong, C.

(2016) Nature 531: 47-52

Released	2016-03-09
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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5FJD \| pdb_00005fjd	Download File View File

APO-CSP1 (COPPER STORAGE PROTEIN 1) FROM METHYLOSINUS TRICHOSPORIUM OB3B

Vita, N., Platsaki, S., Basle, A., Allen, S.J., Paterson, N.G., Crombie, A.T., Murrell, J.C., Waldron, K.J., Dennison, C.

(2015) Nature 525: 140

Released	2015-11-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methylosinus trichosporium OB3b
Macromolecule	COPPER STORAGE PROTEIN 1 (protein)

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5FJE \| pdb_00005fje	Download File View File

CU(I)-CSP1 (COPPER STORAGE PROTEIN 1) FROM METHYLOSINUS TRICHOSPORIUM OB3B

Vita, N., Platsaki, S., Basle, A., Allen, S.J., Paterson, N.G., Crombie, A.T., Murrell, J.C., Waldron, K.J., Dennison, C.

(2015) Nature 525: 140

Released	2015-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methylosinus trichosporium OB3b
Macromolecule	COPPER STORAGE PROTEIN 1 (protein)
Unique Ligands	CU1, NA

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5L75 \| pdb_00005l75	Download File View File

A protein structure

Dong, C., Dong, H., Zhang, Z., Paterson, N., Tang, X.

(2017) Nat Commun 8: 222-222

Released	2017-08-16
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Klebsiella pneumoniae IS22
Macromolecule	FIG000906: Predicted Permease (protein) FIG000988: Predicted permease (protein) Lipopolysaccharide ABC transporter, ATP-binding protein LptB (protein)
Unique Ligands	PT

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5LRM \| pdb_00005lrm	Download File View File

Structure of di-zinc MCR-1 in P41212 space group

Hinchliffe, P., Spencer, J.

(2017) Sci Rep 7: 39392-39392

Released	2016-12-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	phosphatidylethanolamine transferase Mcr-1 (protein)
Unique Ligands	GOL, ZN

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5LRN \| pdb_00005lrn	Download File View File

Structure of mono-zinc MCR-1 in P21 space group

Hinchliffe, P., Paterson, N.G., Spencer, J.

(2017) Sci Rep 7: 39392-39392

Released	2016-12-07
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli
Macromolecule	Phosphatidylethanolamine transferase Mcr-1 (protein)
Unique Ligands	GOL, ZN

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6YLA \| pdb_00006yla	Download File View File

Crystal structure of the SARS-CoV-2 receptor binding domain in complex with CR3022 Fab

Huo, J., Zhao, Y., Ren, J., Zhou, D., Ginn, H.M., Fry, E.E., Owens, R., Stuart, D.I.

(2020) Cell Host Microbe 28: 445-454.e6

Released	2020-04-15
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy Chain (protein) Light chain (protein) Spike glycoprotein (protein)
Unique Ligands	1PE, DMS, MLI, NAG, PG0

1 to 25 of 179 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2HEU | pdb_00002heu

2HFB | pdb_00002hfb

2HQ0 | pdb_00002hq0

2I58 | pdb_00002i58

2XE4 | pdb_00002xe4

3HR6 | pdb_00003hr6

3HTL | pdb_00003htl

3RPK | pdb_00003rpk

4C0Z | pdb_00004c0z

4HSQ | pdb_00004hsq

4HSS | pdb_00004hss

4IDM | pdb_00004idm

4IDS | pdb_00004ids

4IHI | pdb_00004ihi

4JDC | pdb_00004jdc

4N4R | pdb_00004n4r

4TKO | pdb_00004tko

5D0O | pdb_00005d0o

5D0Q | pdb_00005d0q

5FJD | pdb_00005fjd

5FJE | pdb_00005fje

5L75 | pdb_00005l75

5LRM | pdb_00005lrm

5LRN | pdb_00005lrn

6YLA | pdb_00006yla