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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Propp, J."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Leishmania infantum (5)
	Helicobacter pylori (3)
	Homo sapiens (2)
	Candida albicans (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (8)
	Bacteria (3)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

2020 - 2024 (11)

Enzyme Classification Name

	Ligases (6)
	Isomerases (3)
	Hydrolases (2)

Symmetry Type

	Asymmetric (5)
	Cyclic (6)

AllSelected

1 to 11 of 11 Structures

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Explore in 3D

8DGZ \| pdb_00008dgz	Download File View File

Caspase-7 bound to substrate mimic and allosteric inhibitor

Propp, J., Kalenkiewicz, A., Kathryn, F.H., Spies, M.A.

(2023) Chemistry 29: e202300872-e202300872

Released	2023-07-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Ac-Asp-Glu-Val-Asp-Aldehyde (protein) Caspase-7 (protein)
Unique Ligands	8YJ

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8DJ3 \| pdb_00008dj3	Download File View File

Caspase-7 bound to novel allosteric inhibitor

Propp, J., Kalenkiewicz, A., Kathryn, F.H., Spies, M.A.

(2023) Chemistry 29: e202300872-e202300872

Released	2023-07-05
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Caspase-7 (protein)
Unique Ligands	SE1

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8EB3 \| pdb_00008eb3	Download File View File

Crystal structure of glutamate racemase from Helicobacter pylori in complex with a fragment

Cooling, G.T., Propp, J., Spies, M.A.

To be published

Released	2023-09-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Helicobacter pylori
Macromolecule	Glutamate racemase (protein)
Unique Ligands	CL, DGL, DMS, GOL, WFI

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8SF3 \| pdb_00008sf3	Download File View File

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (AMP, Acetate and CoA bound)

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2024) J Biological Chem 300: 107879-107879

Released	2023-04-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Leishmania infantum
Macromolecule	Acetyl-coenzyme A synthetase (protein)
Unique Ligands	ACT, AMP, COA

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8TBA \| pdb_00008tba	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a crystallographic artifact

Propp, J., Spies, M.A.

To be published

Released	2024-07-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Helicobacter pylori
Macromolecule	Glutamate racemase (protein)
Unique Ligands	DGL, DMS, ZMX

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8U2R \| pdb_00008u2r	Download File View File

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (Ethyl AMP bound)

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2024) J Biological Chem 300: 107879-107879

Released	2023-09-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Leishmania infantum
Macromolecule	Acetyl-coenzyme A synthetase (protein)
Unique Ligands	PEG, WTA

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8U2S \| pdb_00008u2s	Download File View File

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (Ethyl AMP bound, P21 form)

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2024) J Biological Chem 300: 107879-107879

Released	2023-09-13
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Leishmania infantum
Macromolecule	Acetyl-coenzyme A synthetase (protein)
Unique Ligands	CAC, CL, GOL, WTA

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8U2T \| pdb_00008u2t	Download File View File

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (CoA and AMP bound)

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2024) J Biological Chem 300: 107879-107879

Released	2023-09-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Leishmania infantum
Macromolecule	Acetyl-coenzyme A synthetase (protein)
Unique Ligands	AMP, CL, COA, SO4

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8U2U \| pdb_00008u2u	Download File View File

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (CoA, AMP and potassium bound)

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2024) J Biological Chem 300: 107879-107879

Released	2023-09-13
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Leishmania infantum
Macromolecule	Acetyl-coenzyme A synthetase (protein)
Unique Ligands	AMP, CL, COA, GOL, K

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8UDI \| pdb_00008udi	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a crystallographic artifact

Propp, J., Spies, M.A.

To be published

Released	2024-10-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Helicobacter pylori
Macromolecule	Glutamate racemase (protein)
Unique Ligands	CL, DGL, WAW

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8V4R \| pdb_00008v4r	Download File View File

Crystal structure of Acetyl-CoA synthetase 2 in complex with AMP and CoA from Candida albicans

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2024) J Biological Chem 300: 107879-107879

Released	2023-12-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Candida albicans
Macromolecule	Acetyl-coenzyme A synthetase 2 (protein)
Unique Ligands	ACY, AMP, COA, GOL

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

8DGZ | pdb_00008dgz

Caspase-7 bound to substrate mimic and allosteric inhibitor

8DJ3 | pdb_00008dj3

Caspase-7 bound to novel allosteric inhibitor

8EB3 | pdb_00008eb3

Crystal structure of glutamate racemase from Helicobacter pylori in complex with a fragment

8SF3 | pdb_00008sf3

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (AMP, Acetate and CoA bound)

8TBA | pdb_00008tba

Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a crystallographic artifact

8U2R | pdb_00008u2r

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (Ethyl AMP bound)

8U2S | pdb_00008u2s

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (Ethyl AMP bound, P21 form)

8U2T | pdb_00008u2t

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (CoA and AMP bound)

8U2U | pdb_00008u2u

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (CoA, AMP and potassium bound)

8UDI | pdb_00008udi

Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a crystallographic artifact

8V4R | pdb_00008v4r

Crystal structure of Acetyl-CoA synthetase 2 in complex with AMP and CoA from Candida albicans

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

8DGZ | pdb_00008dgz

8DJ3 | pdb_00008dj3

8EB3 | pdb_00008eb3

8SF3 | pdb_00008sf3

8TBA | pdb_00008tba

8U2R | pdb_00008u2r

8U2S | pdb_00008u2s

8U2T | pdb_00008u2t

8U2U | pdb_00008u2u

8UDI | pdb_00008udi

8V4R | pdb_00008v4r