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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Richard, S.B."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (17)
	Haloarcula marismortui (8)
	Brassica juncea (4)
	Medicago truncatula (4)
	Escherichia coli K-12 (3)
	Streptomyces sp. CL190 (3)
	Escherichia coli (2)
	Chloroflexus aurantiacus Y-400-fl (1)
	Escherichia coli BL21(DE3) (1)
	Haloferax volcanii (1)

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Taxonomy

	Eukaryota (25)
	Bacteria (11)
	Archaea (10)

Experimental Method

X-RAY DIFFRACTION (46)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (19)
	2.0 - 2.5 (16)
	2.5 - 3.0 (9)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (16)
	2010 - 2014 (4)
	2015 - 2019 (17)

Enzyme Classification Name

	Transferases (12)
	Oxidoreductases (11)
	Lyases (2)

Symmetry Type

	Asymmetric (22)
	Cyclic (15)
	Dihedral (11)

SCOP Classification

	Alpha and beta proteins (a/b) (18)
	All alpha proteins (21)
	Alpha and beta proteins (a+b) (16)

AllSelected

1 to 25 of 46 Structures

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1D3A \| pdb_00001d3a	Download File View File

CRYSTAL STRUCTURE OF THE WILD TYPE HALOPHILIC MALATE DEHYDROGENASE IN THE APO FORM

Richard, S.B., Madern, D., Garcin, E., Zaccai, G.

(2000) Biochemistry 39: 992-1000

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Haloarcula marismortui
Macromolecule	HALOPHILIC MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NA

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1H3M \| pdb_00001h3m	Download File View File

Structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase

Kemp, L.E., Bond, C.S., Hunter, W.N.

(2003) Acta Crystallogr D Biol Crystallogr 59: 607

Released	2003-08-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE (protein)
Unique Ligands	CL, N2P

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1I52 \| pdb_00001i52	Download File View File

CRYSTAL STRUCTURE OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS

Richard, S.B., Bowman, M.E., Kwiatkowski, W., Kang, I., Chow, C., Lillo, M., Cane, D.E., Noel, J.P.

(2001) Nat Struct Biol 8: 641-648

Released	2001-07-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL SYNTHASE (protein)
Unique Ligands	CA, CTP, MG

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1INI \| pdb_00001ini	Download File View File

CRYSTAL STRUCTURE OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHETASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS, COMPLEXED WITH CDP-ME AND MG2+

Richard, S.B., Bowman, M.E., Kwiatkowski, W., Kang, I., Chow, C., Lillo, A., Cane, D.E., Noel, J.P.

(2001) Nat Struct Biol 8: 641-648

Released	2001-11-14
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Escherichia coli K-12
Macromolecule	4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL SYNTHETASE (protein)
Unique Ligands	CDM, MG

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1INJ \| pdb_00001inj	Download File View File

CRYSTAL STRUCTURE OF THE APO FORM OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHETASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS

Richard, S.B., Bowman, M.E., Kwiatkowski, W., Kang, I., Chow, C., Lillo, A., Cane, D.E., Noel, J.P.

(2001) Nat Struct Biol 8: 641-648

Released	2001-07-11
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli K-12
Macromolecule	4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL SYNTHETASE (protein)
Unique Ligands	CA

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1KNJ \| pdb_00001knj	Download File View File

Co-Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate Synthase (ispF) from E. coli Involved in Mevalonate-Independent Isoprenoid Biosynthesis, Complexed with CMP/MECDP/Mn2+

Richard, S.B., Ferrer, J.L., Bowman, M.E., Lillo, A.M., Tetzlaff, C.N., Cane, D.E., Noel, J.P.

(2002) J Biological Chem 277: 8667-8672

Released	2002-06-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, CDI, MN

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1KNK \| pdb_00001knk	Download File View File

Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate Synthase (ispF) from E. coli involved in Mevalonate-Independent Isoprenoid Biosynthesis

Richard, S.B., Ferrer, J.L., Bowman, M.E., Lillo, A.M., Tetzlaff, C.N., Cane, D.E., Noel, J.P.

(2002) J Biological Chem 277: 8667-8672

Released	2002-06-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	MN

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1O6Z \| pdb_00001o6z	Download File View File

1.95 A resolution structure of (R207S,R292S) mutant of malate dehydrogenase from the halophilic archaeon Haloarcula marismortui (holo form)

Irimia, A., Ebel, C., Madern, D., Richard, S.B., Cosenza, L.W., Zaccai, G., Vellieux, F.M.D.

(2003) J Mol Biology 326: 859

Released	2003-02-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Haloarcula marismortui
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NAD

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1ZB6 \| pdb_00001zb6	Download File View File

Co-Crystal Structure of ORF2 an Aromatic Prenyl Transferase from Streptomyces sp. strain cl190 complexed with GSPP and 1,6-dihydroxynaphtalene

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces sp.
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	DIN, GST, MG, NO3

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1ZCW \| pdb_00001zcw	Download File View File

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GPP

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Streptomyces sp. CL190
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	GPP, MG, NO3

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1ZDW \| pdb_00001zdw	Download File View File

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GSPP and Flaviolin

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Streptomyces sp. CL190
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	FLV, GST, MG, NO3

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1ZDY \| pdb_00001zdy	Download File View File

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with TAPS

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Streptomyces sp. CL190
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	T3A

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1ZG3 \| pdb_00001zg3	Download File View File

Crystal structure of the isoflavanone 4'-O-methyltransferase complexed with SAH and 2,7,4'-trihydroxyisoflavanone

Liu, C.-J., Deavours, B.E., Richard, S., Ferrer, J.-L., Dixon, R.A., Noel, J.P.

(2006) Plant Cell 18: 3656-3669

Released	2006-08-01
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Medicago truncatula
Macromolecule	isoflavanone 4'-O-methyltransferase (protein)
Unique Ligands	2HI, SAH

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1ZGA \| pdb_00001zga	Download File View File

Crystal structure of isoflavanone 4'-O-methyltransferase complexed with (+)-6a-hydroxymaackiain

Liu, C.-J., Deavours, B.E., Richard, S., Ferrer, J.-L., Dixon, R.A., Noel, J.P.

(2006) Plant Cell 18: 3656-3669

Released	2006-08-01
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Medicago truncatula
Macromolecule	Isoflavanone 4'-O-methyltransferase' (protein)
Unique Ligands	HMK, SAH

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1ZGJ \| pdb_00001zgj	Download File View File

Crystal structure of isoflavanone 4'-O-methyltransferase complexed with (+)-pisatin

Liu, C.-J., Deavours, B.E., Richard, S., Ferrer, J.-L., Dixon, R.A., Noel, J.P.

(2006) Plant Cell 18: 3656-3669

Released	2006-08-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Medicago truncatula
Macromolecule	Isoflavanone 4'-O-methyltransferase' (protein)
Unique Ligands	P1S, SAH

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1ZHF \| pdb_00001zhf	Download File View File

Crystal structure of selenomethionine substituted isoflavanone 4'-O-methyltransferase

Liu, C.-J., Deavours, B.E., Richard, S., Ferrer, J.-L., Dixon, R.A., Noel, J.P.

(2006) Plant Cell 18: 3656-3669

Released	2006-08-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Medicago truncatula
Macromolecule	Isoflavanone 4'-O-methyltransferase (protein)
Unique Ligands	SAH

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2F82 \| pdb_00002f82	Download File View File

HMG-CoA synthase from Brassica juncea in the apo-form

Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P.

(2006) Proc Natl Acad Sci U S A 103: 11491-11496

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Brassica juncea
Macromolecule	HMG-CoA synthase (protein)

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2F9A \| pdb_00002f9a	Download File View File

HMG-CoA synthase from Brassica juncea in complex with F-244

Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P.

(2006) Proc Natl Acad Sci U S A 103: 11491-11496

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Brassica juncea
Macromolecule	3-Hydroxy-3-methylglutaryl coenzyme A synthase 1 (protein)
Unique Ligands	F24