RCSB PDB: Search

3B1E \| pdb_00003b1e	Download File View File

Crystal structure of betaC-S lyase from Streptococcus anginosus in complex with L-serine: alpha-Aminoacrylate form

Kezuka, Y., Yoshida, Y., Nonaka, T.

(2012) Proteins 80: 2447-2458

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Streptococcus anginosus
Macromolecule	BetaC-S lyase (protein)
Unique Ligands	0JO, ACT, EPE, NA

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4D9M \| pdb_00004d9m	Download File View File

Crystal structure of Diaminopropionate ammonia lyase from Escherichia coli in complex with aminoacrylate-PLP azomethine reaction intermediate

Bisht, S., Rajaram, V., Bharath, S.R., Murthy, M.R.N.

(2012) J Biological Chem 287: 20369-20381

Released	2012-04-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Diaminopropionate ammonia-lyase (protein)
Unique Ligands	0JO

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4HN4 \| pdb_00004hn4	Download File View File

Tryptophan synthase in complex with alpha aminoacrylate E(A-A) form and the F9 inhibitor in the alpha site

Hilario, E., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2013) Biochemistry 52: 6396-6411

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, BCN, CS, F9F, PEG

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4HPX \| pdb_00004hpx	Download File View File

Crystal structure of Tryptophan Synthase at 1.65 A resolution in complex with alpha aminoacrylate E(A-A) and benzimidazole in the beta site and the F9 inhibitor in the alpha site

Hilario, E., Niks, D., Dunn, M.F., Mueller, L.J., Fan, L.

(2013) Biochemistry 52: 6396-6411

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, BCN, BZI, CS, F9F, PEG

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4IY7 \| pdb_00004iy7	Download File View File

crystal structure of cystathionine gamma lyase (XometC) from Xanthomonas oryzae pv. oryzae in complex with E-site serine, A-site external aldimine structure with serine and A-site external aldimine structure with aminoacrylate intermediates

Ngo, H.P.T., Kim, J.K., Kang, L.W.

(2014) Acta Crystallogr D Biol Crystallogr 70: 596-606

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Cystathionine gamma-lyase-like protein (protein)
Unique Ligands	0JO, GOL, KOU, PYR, SER, SO4

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4IYO \| pdb_00004iyo	Download File View File

Crystal structure of cystathionine gamma lyase from Xanthomonas oryzae pv. oryzae (XometC) in complex with E-site serine, A-site serine, A-site external aldimine structure with aminoacrylate and A-site iminopropionate intermediates

Ngo, H.P.T., Kim, J.K., Kang, L.W.

(2014) Acta Crystallogr D Biol Crystallogr 70: 596-606

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Cystathionine gamma-lyase-like protein (protein) Cystathionine gamma-lyase-like protein, LYS201A modified (protein)
Unique Ligands	0JO, GOL, NAK, PYR, SER, SO4

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5B3A \| pdb_00005b3a	Download File View File

Crystal Structure of O-Phoshoserine Sulfhydrylase from Aeropyrum pernix in Complexed with the alpha-Aminoacrylate Intermediate

Nakamura, T., Takeda, E., Kawai, Y., Kataoka, M., Ishikawa, K.

(2016) Extremophiles 20: 733-745

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Aeropyrum pernix K1
Macromolecule	Protein CysO (protein)
Unique Ligands	0JO, MPD

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5B55 \| pdb_00005b55	Download File View File

Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) D232N mutant in complexed with alpha-aminoacrylate intermediate: lysine-dimethylated form

Kezuka, Y., Yoshida, Y., Nonaka, T.

(2018) Biochem J 475: 733-748

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Macromolecule	Cysteine synthase (protein)
Unique Ligands	0JO, PEG, PLP

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5DBE \| pdb_00005dbe	Download File View File

Crystal structure of O-acetylserine sulfhydrylase from Haemophilus influenzae in complex with pre-reactive O-acetyl serine, alpha-aminoacrylate reaction intermediate and peptide inhibitor at the resolution of 2.25A

Singh, A.K., Kaushik, A., Ekka, M.K., Kumaran, S.

To be published

Released	2015-09-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Haemophilus influenzae Rd KW20 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	C-terminal peptide from Serine acetyltransferase (protein) Cysteine synthase (protein)
Unique Ligands	0JO, GOL, OAS

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5DBH \| pdb_00005dbh	Download File View File

Crystal structure of O-acetylserine sulfhydrylase from haemophilus influenzae in complex with reaction intermediate alpha-aminoacrylate

Kaushik, A., Ekka, M.K., Singh, A.K., Kumaran, S.

To be published

Released	2015-09-09
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	Cysteine synthase (protein)
Unique Ligands	0JO, GOL

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5VM5 \| pdb_00005vm5	Download File View File

Engineered tryptophan synthase b-subunit from Pyrococcus furiosus, PfTrpB2B9, with Ser bound

Buller, A.R., van Roye, P.

(2018) J Am Chem Soc 140: 7256-7266

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Tryptophan synthase beta chain 1 (protein)
Unique Ligands	0JO, NA, PLS

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6AM9 \| pdb_00006am9	Download File View File

Engineered tryptophan synthase b-subunit from Pyrococcus furiosus, PfTrpB2B9, with Ser-bound in a predominantly closed state.

Buller, A.R., van Roye, P.

(2018) J Am Chem Soc 140: 7256-7266

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Tryptophan synthase beta chain 1 (protein)
Unique Ligands	0JO, NA, PLS

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6D0V \| pdb_00006d0v	Download File View File

Tryptophan synthase Q114A mutant in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the alpha-site, aminoacrylate at the beta site, and cesium ion at the metal coordination site

Hilario, E., Dunn, M.F., Mueller, L.J., Fan, L.

To be published

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, CL, CS, DMS, EDO, F9F, PEG, SER

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6LD8 \| pdb_00006ld8	Download File View File

Crystal structure of cystathionine gamma synthase from Xanthomonas oryzae pv. oryzae in complex with aminoacrylate and cysteine

Ngo, H.P.T., Nguyen, T.D.Q., Kang, L.W.

To be published

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Cystathionine gamma-synthase (protein)
Unique Ligands	0JO, CYS

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6MLS \| pdb_00006mls	Download File View File

Citrobacter freundii tyrosine phenol-lyase complexed with 4-hydroxypyridine and aminoacrylate from L-tyrosine

Phillips, R.S.

(2020) ACS Catal 10: 1692-1703

Released	2019-10-02
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Citrobacter freundii
Macromolecule	Tyrosine phenol-lyase (protein)
Unique Ligands	0JO, CQG, K, P33

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6MME \| pdb_00006mme	Download File View File

Citrobacter freundii tyrosine phenol-lyase complexed with 4-hydroxypyridine and aminoacrylate from S-ethyl-L-cysteine

Phillips, R.S.

(2020) ACS Catal 10: 1692-1703

Released	2019-10-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Citrobacter freundii
Macromolecule	Tyrosine phenol-lyase (protein)
Unique Ligands	0JO, CQG, K, P33

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6MO3 \| pdb_00006mo3	Download File View File

Citrobacter freundii tyrosine phenol-lyase complexed with 4-hydroxypyridine and aminoacrylate from L-serine

Phillips, R.S.

(2020) ACS Catal 10: 1692-1703

Released	2019-10-16
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Citrobacter freundii
Macromolecule	Tyrosine phenol-lyase (protein)
Unique Ligands	0JO, CQG, K, P33, SER

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6MPD \| pdb_00006mpd	Download File View File

Citrobacter freundii tyrosine phenol-lyase complexed with 4-hydroxypyridine and aminoacrylate from 3-F-L-tyrosine

Phillips, R.S.

(2020) ACS Catal 10: 1692-1703

Released	2019-10-16
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Citrobacter freundii
Macromolecule	Tyrosine phenol-lyase (protein)
Unique Ligands	0JO, CQG, K, P33, YOF

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6MQQ \| pdb_00006mqq	Download File View File

Citrobacter freundii F448A mutant tyrosine phenol-lyase complexed with 4-hydroxypyridine and aminoacrylate from S-ethyl-L-cysteine

Phillips, R.S.

(2020) ACS Catal 10: 1692-1703

Released	2019-10-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Citrobacter freundii
Macromolecule	Tyrosine phenol-lyase (protein)
Unique Ligands	0JO, CQG, K, P33

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6NV8 \| pdb_00006nv8	Download File View File

Perdeuterated tyrosine phenol-lyase from Citrobacter freundii complexed with an aminoacrylate intermediate formed from S-ethyl-L-cysteine and 4-hydroxypyridine

Phillips, R.S.

(2020) ACS Catal 10: 1692-1703

Released	2020-02-12
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Citrobacter freundii
Macromolecule	Tyrosine phenol-lyase (protein)
Unique Ligands	0JO, CQG, DHA, K, P33

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6VNT \| pdb_00006vnt	Download File View File

Tryptophan synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the alpha-site, aminoacrylate at the beta site, and sodium ion at the metal coordination site at 1.25 Angstrom resolution

Hilario, E., Fan, L., Dunn, M.F., Mueller, L.J.

To be published

Released	2021-02-03
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, EDO, F9F, NA, PEG

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6X0C \| pdb_00006x0c	Download File View File

Tryptophan Synthase mutant beta-Q114A in complex with Cesium ion at the metal coordination site and aminoacrylate and benzimidazole at the enzyme beta site

Hilario, E., Dunn, M.F., Mueller, L.J., Fan, L.

To be published

Released	2021-03-10
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, BZI, CL, CS, DMS, EDO, PEG

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7KA1 \| pdb_00007ka1	Download File View File

1.60 Angstrom resolution crystal structure of the beta-Q114A mutant Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the alpha-site, aminoacrylate at the beta site, and cesium ion at the metal coordination site

Hilario, E., Dunn, M.F., Mueller, L.J.

To be published

Released	2021-09-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, CL, CS, DMS, EDO, F9F, PEG, SER

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7KQ9 \| pdb_00007kq9	Download File View File

The aminoacrylate form of the beta-Q114A mutant Tryptophan Synthase at 1.50 Angstrom resolution with cesium ion at the metal coordination site

Hilario, E., Dunn, M.F., Mueller, L.J.

To be published

Released	2021-11-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, BR, CL, CS, DMS, EDO, PEG, SER

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7KWV \| pdb_00007kwv	Download File View File

The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site at 1.30 Angstrom resolution

Hilario, E., Dunn, M.F., Mueller, L.J.

To be published

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	0JO, BCN, CL, CS, EDO, F9F, PEG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3B1E | pdb_00003b1e

4D9M | pdb_00004d9m

4HN4 | pdb_00004hn4

4HPX | pdb_00004hpx

4IY7 | pdb_00004iy7

4IYO | pdb_00004iyo

5B3A | pdb_00005b3a

5B55 | pdb_00005b55

5DBE | pdb_00005dbe

5DBH | pdb_00005dbh

5VM5 | pdb_00005vm5

6AM9 | pdb_00006am9

6D0V | pdb_00006d0v

6LD8 | pdb_00006ld8

6MLS | pdb_00006mls

6MME | pdb_00006mme

6MO3 | pdb_00006mo3

6MPD | pdb_00006mpd

6MQQ | pdb_00006mqq

6NV8 | pdb_00006nv8

6VNT | pdb_00006vnt

6X0C | pdb_00006x0c

7KA1 | pdb_00007ka1

7KQ9 | pdb_00007kq9

7KWV | pdb_00007kwv