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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = G3P

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Search Summary

This query matches 55 Structures.

Refinements

Structure Determination Methodology

experimental (55)

Scientific Name of Source Organism

	Escherichia coli (6)
	Neisseria meningitidis 8013 (6)
	Salmonella enterica subsp. enterica serovar Typhimurium (5)
	Vicugna pacos (3)
	Aliarcobacter butzleri RM4018 (2)
	Bacillus subtilis subsp. subtilis str. 168 (2)
	Homo sapiens (2)
	Leishmania mexicana (2)
	Saccharomyces cerevisiae (2)
	Thermoplasma acidophilum DSM 1728 (2)

More...

Taxonomy

	Bacteria (36)
	Eukaryota (18)
	Archaea (3)
	Riboviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (49)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

Protein (55)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (5)
	1.5 - 2.0 (14)
	2.0 - 2.5 (16)
	2.5 - 3.0 (14)
	3.0 - 3.5 (5)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2000 - 2004 (6)
	2005 - 2009 (6)
	2010 - 2014 (11)
	2015 - 2019 (18)
	2020 - 2024 (10)
	2025 - 2029 (2)

Enzyme Classification Name

	Lyases (11)
	Oxidoreductases (8)
	Transferases (9)
	Hydrolases (7)
	Isomerases (6)

Membrane Protein Annotation

	MemProtMD (7)
	PDBTM (5)
	OPM (4)
	mpstruc (1)

Symmetry Type

	Cyclic (27)
	Asymmetric (21)
	Dihedral (10)

SCOP Classification

	Alpha and beta proteins (a/b) (27)
	Membrane and cell surface proteins and peptides (2)
	Alpha and beta proteins (a+b) (5)
	All alpha proteins (3)
	Artifacts (2)
	All beta proteins (1)

AllSelected

1 to 25 of 55 Structures

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1DC4 \| pdb_00001dc4	Download File View File

STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES

Yun, M., Park, C.-G., Kim, J.-Y., Park, H.-W.

(2000) Biochemistry 39: 10702-10710

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	G3P

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1FDJ \| pdb_00001fdj	Download File View File

FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM RABBIT LIVER

Blom, N.S., White, A., Sygusch, J.

To be published

Released	2001-07-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Oryctolagus cuniculus
Macromolecule	FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE (protein)
Unique Ligands	13P, 2FP, G3P, SO4

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1IXN \| pdb_00001ixn	Download File View File

Enzyme-Substrate Complex of Pyridoxine 5'-Phosphate Synthase

Garrido-Franco, M., Laber, B., Huber, R., Clausen, T.

(2002) J Mol Biology 321: 601-612

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxine 5'-Phosphate Synthase (protein)
Unique Ligands	DXP, G3P

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1IXO \| pdb_00001ixo	Download File View File

Enzyme-analogue substrate complex of Pyridoxine 5'-Phosphate Synthase

Garrido-Franco, M., Laber, B., Huber, R., Clausen, T.

(2002) J Mol Biology 321: 601-612

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxine 5'-Phosphate synthase (protein)
Unique Ligands	G3P

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1OF8 \| pdb_00001of8	Download File View File

double complex of the tyrosine sensitive DAHP Synthase from S. cerevisiae with Co2+, PEP and the E4P analogoue G3P

Koenig, V., Pfeil, A., Heinrich, G., Braus, G.H., Schneider, T.R.

(2004) J Mol Biology 337: 675

Released	2004-04-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE, TYROSINE-INHIBITED (protein)
Unique Ligands	CO, G3P, GOL, PEP

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1QI1 \| pdb_00001qi1	Download File View File

Ternary Complex of an NADP Dependent Aldehyde Dehydrogenase

Cobessi, D., Tete-Favier, F., Marchal, S., Branlant, G., Aubry, A.

(2000) J Mol Biology 300: 141-152

Released	2001-01-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptococcus mutans
Macromolecule	PROTEIN (NADP-DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE) (protein)
Unique Ligands	G3H, G3P, NAP

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1WBJ \| pdb_00001wbj	Download File View File

wildtype tryptophan synthase complexed with glycerol phosphate

Kulik, V., Weyand, M., Schlichting, I.

(2005) J Mol Biology 352: 608

Released	2006-05-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE ALPHA CHAIN (protein) TRYPTOPHAN SYNTHASE BETA CHAIN (protein)
Unique Ligands	G3P, NA, PLP

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1Y38 \| pdb_00001y38	Download File View File

Crystal structure of the complex formed between phospholipase A2 dimer and glycerophosphate at 2.4 A resolution

Singh, N., Jabeen, T., Sharma, S., Singh, T.P.

To be published

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	G3P, NA, PGE, SO4

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1Z82 \| pdb_00001z82	Download File View File

Crystal structure of glycerol-3-phosphate dehydrogenase (TM0378) from THERMOTOGA MARITIMA at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2005-04-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	glycerol-3-phosphate dehydrogenase (protein)
Unique Ligands	G3H, G3P, MPD, MRD, NDP

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2J9X \| pdb_00002j9x	Download File View File

Tryptophan Synthase in complex with GP, alpha-D,L-glycerol-phosphate, Cs, pH6.5 - alpha aminoacrylate form - (GP)E(A-A)

Ngo, H., Kimmich, N., Harris, R., Niks, D., Blumenstein, L., Kulik, V., Barends, T.R., Schlichting, I., Dunn, M.F.

(2007) Biochemistry 46: 7740

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE ALPHA CHAIN (protein) TRYPTOPHAN SYNTHASE BETA CHAIN (protein)
Unique Ligands	CS, DMS, G3P, P1T

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2TSY \| pdb_00002tsy	Download File View File

CRYSTAL STRUCTURES OF MUTANT (BETAK87T) TRYPTOPHAN SYNTHASE ALPHA2 BETA2 COMPLEX WITH LIGANDS BOUND TO THE ACTIVE SITES OF THE ALPHA AND BETA SUBUNITS REVEAL LIGAND-INDUCED CONFORMATIONAL CHANGES

Rhee, S., Parris, K.D., Hyde, C.C., Ahmed, S.A., Miles, E.W., Davies, D.R.

(1997) Biochemistry 36: 7664-7680

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE (protein)
Unique Ligands	G3P, NA, PLS

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2Y61 \| pdb_00002y61	Download File View File

Crystal structure of Leishmanial E65Q-TIM complexed with S-Glycidol phosphate

Venkatesan, R., Alahuhta, M., Pihko, P.M., Wierenga, R.K.

(2011) Protein Sci 20: 1387-1397

Released	2011-12-14
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSEPHOSPHATE ISOMERASE SYNONYM TRIOSE-PHOSPHATE ISOMERASE, TIM (protein)
Unique Ligands	1GP, G3P, GOL

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2Y62 \| pdb_00002y62	Download File View File

Crystal structure of Leishmanial E65Q-TIM complexed with R-Glycidol phosphate

Venkatesan, R., Alahuhta, M., Pihko, P.M., Wierenga, R.K.

(2011) Protein Sci 20: 1387

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSEPHOSPHATE ISOMERASE SYNONYM TRIOSE-PHOSPHATE ISOMERASE, TIM (protein)
Unique Ligands	1GP, G3P, GOL

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3CEP \| pdb_00003cep	Download File View File

Structure of a tryptophan synthase quinonoid intermediate

Barends, T.R.M., Domratcheva, T., Kulik, V., Blumenstein, L., Dunn, M.F., Schlichting, I.

(2008) Chembiochem 9: 1024-1028

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	CS, G3P, IDM, MH6, PLP

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3EKZ \| pdb_00003ekz	Download File View File

Structural Characterization of tetrameric Mycobacterium tuberculosis fructose 1,6-bisphosphate aldolase - substrate binding and catalysis mechanism of a class IIa bacterial aldolase

Pegan, S., Rukseree, K., Franzblau, S.G., Mesecar, A.D.

(2009) J Mol Biology 386: 1038-1053

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Fructose-bisphosphate aldolase (protein)
Unique Ligands	13P, G3P, NA, ZN

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3PL9 \| pdb_00003pl9	Download File View File

Crystal structure of spinach minor light-harvesting complex CP29 at 2.80 angstrom resolution

Pan, X.W., Li, M., Wan, T., Wang, L.F., Jia, C.J., Hou, Z.Q., Zhao, X.L., Zhang, J.P., Chang, W.R.

(2011) Nat Struct Mol Biol 18: 309-315

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Spinacia oleracea
Macromolecule	Chlorophyll A-B binding protein (protein)
Unique Ligands	CHL, CLA, G3P, HTG, LUT, NEX, XAT

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3QVQ \| pdb_00003qvq	Download File View File

The structure of an Oleispira antarctica phosphodiesterase OLEI02445 in complex with the product sn-glycerol-3-phosphate

Singer, A.U., Kagan, O., Evdokimova, E., Cuff, M.E., Edwards, A.M., Joachimiak, A., Yakunin, A.F., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.602 Å
Organisms	Oleispira antarctica
Macromolecule	Phosphodiesterase Olei02445 (protein)
Unique Ligands	CL, EDO, G3P, MG, NA, NI, PEG

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3RF6 \| pdb_00003rf6	Download File View File

Crystal structure of glycerol-3 phosphate bound HAD-like phosphatase from Saccharomyces cerevisiae

Nocek, B., Kuznetsova, K., Evdokimova, E., Savchenko, A., Iakunine, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2011-06-01
Method	X-RAY DIFFRACTION 1.695 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Uncharacterized protein YKR070W (protein)
Unique Ligands	FLC, G3P, MG

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3UWU \| pdb_00003uwu	Download File View File

Crystal structure of Staphylococcus Aureus triosephosphate isomerase complexed with glycerol-3-phosphate

Mukherjee, S., Roychowdhury, A., Dutta, D., Das, A.K.

(2012) Biochimie 94: 2532-2544

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Triosephosphate isomerase (protein)
Unique Ligands	CIT, G3P

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3WXJ \| pdb_00003wxj	Download File View File

Crystal structure of trypanosoma brucei gambiense glycerol kinase in complex with glycerol 3-phosphate

Balogun, E.O., Inaoka, D.K., Shiba, T., Kido, Y., Tsuge, C., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Michels, P.A.M., Kita, K., Harada, S.

(2014) Mol Microbiol 94: 1315-1329

Released	2014-12-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Trypanosoma brucei gambiense
Macromolecule	Glycerol kinase (protein)
Unique Ligands	G3P, GOL

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4AQ4 \| pdb_00004aq4	Download File View File

substrate bound sn-glycerol-3-phosphate binding periplasmic protein ugpB from Escherichia coli

Wuttge, S., Bommer, M., Jaeger, F., Martins, B.M., Jacob, S., Licht, A., Scheffel, F., Dobbek, H., Schneider, E.

(2012) Mol Microbiol 86: 908

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	SN-GLYCEROL-3-PHOSPHATE-BINDING PERIPLASMIC PROTEIN UGPB (protein)
Unique Ligands	CD, CO, G3P, GOL, MG

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4HG9 \| pdb_00004hg9	Download File View File

Crystal structure of AhV_bPA, a basic PLA2 from Agkistrodon halys pallas venom

Zeng, F., Niu, L., Li, X., Teng, M.

To be published

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Gloydius halys
Macromolecule	Basic phospholipase A2 B (protein)
Unique Ligands	CA, CIT, G3P, GOL

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4NHB \| pdb_00004nhb	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio desulfuricans (Ddes_1525), Target EFI-510107, with bound sn-glycerol-3-phosphate

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-11-20
Method	X-RAY DIFFRACTION 1.902 Å
Organisms	Desulfovibrio desulfuricans ATCC 27774
Macromolecule	TRAP dicarboxylate transporter-DctP subunit (protein)
Unique Ligands	G3P, IOD

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4PFB \| pdb_00004pfb	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Fusobacterium nucleatun (FN1258, TARGET EFI-510120) with bound SN-glycerol-3-phosphate

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2014-05-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Macromolecule	C4-dicarboxylate-binding protein (protein)
Unique Ligands	G3P, IMD, ZN

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4RKU \| pdb_00004rku	Download File View File

Crystal structure of plant Photosystem I at 3 Angstrom resolution

Mazor, Y., Borovikova, A., Greenberg, I., Nelson, N.

To be published

Released	2015-02-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pisum sativum
Macromolecule	Unique protein chains: 17
Unique Ligands	BCR, CL0, CLA, DGD, G3P, LHG, LMG, LUT, NEX, PQN, SF4

1 to 25 of 55 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DC4 | pdb_00001dc4

1FDJ | pdb_00001fdj

1IXN | pdb_00001ixn

1IXO | pdb_00001ixo

1OF8 | pdb_00001of8

1QI1 | pdb_00001qi1

1WBJ | pdb_00001wbj

1Y38 | pdb_00001y38

1Z82 | pdb_00001z82

2J9X | pdb_00002j9x

2TSY | pdb_00002tsy

2Y61 | pdb_00002y61

2Y62 | pdb_00002y62

3CEP | pdb_00003cep

3EKZ | pdb_00003ekz

3PL9 | pdb_00003pl9

3QVQ | pdb_00003qvq

3RF6 | pdb_00003rf6

3UWU | pdb_00003uwu

3WXJ | pdb_00003wxj

4AQ4 | pdb_00004aq4

4HG9 | pdb_00004hg9

4NHB | pdb_00004nhb

4PFB | pdb_00004pfb

4RKU | pdb_00004rku