RCSB PDB: Search

1JB0 \| pdb_00001jb0	Download File View File

Crystal Structure of Photosystem I: a Photosynthetic Reaction Center and Core Antenna System from Cyanobacteria

Jordan, P., Fromme, P., Witt, H.T., Klukas, O., Saenger, W., Krauss, N.

(2001) Nature 411: 909-917

Released	2001-08-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Synechococcus elongatus
Macromolecule	Unique protein chains: 12
Unique Ligands	BCR, CA, CLA, LHG, LMG, PQN, SF4

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1Q90 \| pdb_00001q90	Download File View File

Structure of the cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase) from Chlamydomonas reinhardtii

Stroebel, D., Choquet, Y., Popot, J.-L., Picot, D.

(2003) Nature 426: 413-418

Released	2003-12-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Unique protein chains: 9
Unique Ligands	BCR, CLA, FES, HEC, LFA, LMG, SQD, TDS

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2WSC \| pdb_00002wsc	Download File View File

Improved Model of Plant Photosystem I

Amunts, A., Toporik, H., Borovikov, A., Nelson, N.

(2010) J Biological Chem 285: 3478

Released	2009-11-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Arabidopsis thaliana Glycine max Hordeum vulgare Phaseolus vulgaris Pisum sativum Spinacia oleracea
Macromolecule	Unique protein chains: 18
Unique Ligands	BCR, CLA, LMG, LMU, PQN, SF4, UNL
Unique branched monosaccharides	FRU, GLC

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2WSE \| pdb_00002wse	Download File View File

Improved Model of Plant Photosystem I

Amunts, A., Toporik, H., Borovikov, A., Nelson, N.

(2010) J Biological Chem 285: 3478-3486

Released	2009-11-17
Method	X-RAY DIFFRACTION 3.49 Å
Organisms	Arabidopsis thaliana Glycine max Hordeum vulgare Phaseolus vulgaris Pisum sativum Spinacia oleracea
Macromolecule	Unique protein chains: 18
Unique Ligands	BCR, CLA, LMG, LMU, PQN, SF4, UNL
Unique branched monosaccharides	FRU, GLC

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2WSF \| pdb_00002wsf	Download File View File

Improved Model of Plant Photosystem I

Amunts, A., Toporik, H., Borovikov, A., Nelson, N.

(2010) J Biological Chem 285: 3478-3486

Released	2009-11-17
Method	X-RAY DIFFRACTION 3.48 Å
Organisms	Arabidopsis thaliana Glycine max Hordeum vulgare Phaseolus vulgaris Pisum sativum Spinacia oleracea
Macromolecule	Unique protein chains: 18
Unique Ligands	BCR, CLA, LMG, LMU, PQN, SF4, UNL
Unique branched monosaccharides	FRU, GLC

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3JCU \| pdb_00003jcu	Download File View File

Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution

Wei, X.P., Zhang, X.Z., Su, X.D., Cao, P., Liu, X.Y., Li, M., Chang, W.R., Liu, Z.F.

(2016) Nature 534: 69-74

Released	2016-05-25
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Spinacia oleracea
Macromolecule	Unique protein chains: 23
Unique Ligands	BCR, BCT, CHL, CL, CLA, DGD, FE2, HEM, LHG, LMG, LUT, NEX, OEX, PHO, PL9, SQD, XAT

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3KZI \| pdb_00003kzi	Download File View File

Crystal Structure of Monomeric Form of Cyanobacterial Photosystem II

Gabdulkhakov, A., Guskov, A., Broser, M., Kern, J., Zouni, A., Saenger, W.

(2010) J Biological Chem 285: 26255-26262

Released	2010-06-16
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CLA, DGD, FE2, HEM, LHG, LMG, LMT, MES, OEC, PHO, PL9, SQD

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3LW5 \| pdb_00003lw5	Download File View File

Improved model of plant photosystem I

Nelson, N., Toporik, H.

(2010) J Biological Chem 285: 3478-3486

Released	2010-08-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Pisum sativum unidentified
Macromolecule	Unique protein chains: 18
Unique Ligands	BCR, CLA, LMG, LMU, PQN, SF4

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3PCQ \| pdb_00003pcq	Download File View File

Femtosecond X-ray protein Nanocrystallography

Chapman, H.N., Fromme, P., Barty, A., White, T.A., Kirian, R.A., Aquila, A., Hunter, M.S., Schulz, J., Deponte, D.P., Weierstall, U., Doak, R.B., Maia, F.R.N.C., Martin, A.V., Schlichting, I., Lomb, L., Coppola, N., Shoeman, R.L., Epp, S.W., Hartmann, R., Rolles, D., Rudenko, A., Foucar, L., Kimmel, N., Weidenspointner, G., Holl, P., Liang, M., Barthelmess, M., Caleman, C., Boutet, S., Bogan, M.J., Krzywinski, J., Bostedt, C., Bajt, S., Gumprecht, L., Rudek, B., Erk, B., Schmidt, C., Homke, A., Reich, C., Pietschner, D., Struder, L., Hauser, G., Gorke, H., Ullrich, J., Herrmann, S., Schaller, G., Schopper, F., Soltau, H., Kuhnel, K.-U., Messerschmidt, M., Bozek, J.D., Hau-Riege, S.P., Frank, M., Hampton, C.Y., Sierra, R., Starodub, D., Williams, G.J., Hajdu, J., Timneanu, N., Seibert, M.M., Andreasson, J., Rocker, A., Jonsson, O., Svenda, M., Stern, S., Nass, K., Andritschke, R., Schroter, C.-D., Krasniqi, F., Bott, M., Schmidt, K.E., Wang, X., Grotjohann, I., Holton, J.M., Barends, T.R.M., Neutze, R., Marchesini, S., Fromme, R., Schorb, S., Rupp, D., Adolph, M., Gorkhover, T., Andersson, I., Hirsemann, H., Potdevin, G., Graafsma, H., Nilsson, B., Spence, J.C.H.

(2011) Nature 470: 73-77

Released	2011-02-02
Method	X-RAY DIFFRACTION 8.984 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 12
Unique Ligands	BCR, CA, CLA, LHG, LMG, PQN, SF4

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3WU2 \| pdb_00003wu2	Download File View File

Crystal structure analysis of Photosystem II complex

Umena, Y., Kawakami, K., Shen, J.R., Kamiya, N.

(2011) Nature 473: 55-60

Released	2014-09-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermostichus vulcanus
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, GOL, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, SO4, SQD, UNL

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4FBY \| pdb_00004fby	Download File View File

fs X-ray diffraction of Photosystem II

Kern, J., Alonso-Mori, R., Hellmich, J., Tran, R., Hattne, J., Laksmono, H., Gloeckner, C., Echols, N., Sierra, R.G., Sellberg, J., Lassalle-Kaiser, B., Gildea, R.J., Glatzel, P., Grosse-Kunstleve, R.W., Latimer, M.J., Mcqueen, T.A., Difiore, D., Fry, A.R., Messerschmidt, M.M., Miahnahri, A., Schafer, D.W., Seibert, M.M., Sokaras, D., Weng, T.-C., Zwart, P.H., White, W.E., Adams, P.D., Bogan, M.J., Boutet, S., Williams, G.J., Messinger, J., Sauter, N.K., Zouni, A., Bergmann, U., Yano, J., Yachandra, V.K.

(2012) Proc Natl Acad Sci U S A 109: 9721-9726

Released	2012-06-20
Method	X-RAY DIFFRACTION 6.56 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMT, OEC, PHO, PL9, SQD

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4FE1 \| pdb_00004fe1	Download File View File

Improving the Accuracy of Macromolecular Structure Refinement at 7 A Resolution

Fromme, R., Adams, P.D., Fromme, P., Levitt, M., Schroeder, G.F., Brunger, A.T.

(2012) Structure 20: 957-966

Released	2012-08-15
Method	X-RAY DIFFRACTION 4.9228 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 12
Unique Ligands	BCR, CA, CLA, LHG, LMG, PQN, SF4

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4IL6 \| pdb_00004il6	Download File View File

Structure of Sr-substituted photosystem II

Koua, F.H.M., Umena, Y., Kawakami, K., Kamiya, N., Shen, J.R.

(2013) Proc Natl Acad Sci U S A 110: 3889-3894

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermostichus vulcanus Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CL, CLA, DGD, DMS, FE2, GOL, HEM, HTG, LHG, LMG, LMT, MG, OER, PHO, PL9, SQD, UNL

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4IXQ \| pdb_00004ixq	Download File View File

RT fs X-ray diffraction of Photosystem II, dark state

Kern, J., Alonso-Mori, R., Tran, R., Hattne, J., Gildea, R.J., Echols, N., Gloeckner, C., Hellmich, J., Laksmono, H., Sierra, R.G., Lassalle-Kaiser, B., Koroidov, S., Lampe, A., Han, G., Gul, S., DiFiore, D., Milathianaki, D., Fry, A.R., Miahnahri, A., Schafer, D.W., Messerschmidt, M., Seibert, M.M., Koglin, J.E., Sokaras, D., Weng, T.-C., Sellberg, J., Latimer, M.J., Grosse-Kunstleve, R.W., Zwart, P.H., White, W.E., Glatzel, P., Adams, P.D., Bogan, M.J., Williams, G.J., Boutet, S., Messinger, J., Zouni, A., Sauter, N.K., Yachandra, V.K., Bergmann, U., Yano, J.

(2013) Science 340: 491-495

Released	2013-02-20
Method	X-RAY DIFFRACTION 5.7 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMT, OEC, PHO, PL9, SQD

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4IXR \| pdb_00004ixr	Download File View File

RT fs X-ray diffraction of Photosystem II, first illuminated state

Kern, J., Alonso-Mori, R., Tran, R., Hattne, J., Gildea, R.J., Echols, N., Gloeckner, C., Hellmich, J., Laksmono, H., Sierra, R.G., Lassalle-Kaiser, B., Koroidov, S., Lampe, A., Han, G., Gul, S., DiFiore, D., Milathianaki, D., Fry, A.R., Miahnahri, A., Schafer, D.W., Messerschmidt, M., Seibert, M.M., Koglin, J.E., Sokaras, D., Weng, T.-C., Sellberg, J., Latimer, M.J., Grosse-Kunstleve, R.W., Zwart, P.H., White, W.E., Glatzel, P., Adams, P.D., Bogan, M.J., Williams, G.J., Boutet, S., Messinger, J., Zouni, A., Sauter, N.K., Yachandra, V.K., Bergmann, U., Yano, J.

(2013) Science 340: 491-495

Released	2013-02-20
Method	X-RAY DIFFRACTION 5.9 Å
Organisms	Thermosynechococcus vestitus
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMT, OEC, PHO, PL9, SQD

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4KT0 \| pdb_00004kt0	Download File View File

Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803

Mazor, Y., Nataf, D., Toporik, H., Nelson, N.

(2014) Elife 3: e01496-e01496

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Unique protein chains: 9
Unique Ligands	BCR, CL, CL0, CLA, LHG, LMG, LMU, PQN, SF4

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4L6V \| pdb_00004l6v	Download File View File

Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803

Mazor, Y., Nataf, D., Toporik, H., Nelson, N.

(2014) Elife 3: e01496-e01496

Released	2014-02-05
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Bacillus subtilis BEST7613 Synechocystis sp. PCC 6803
Macromolecule	Unique protein chains: 10
Unique Ligands	BCR, CLA, LHG, LMG, PQN, SF4

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4PJ0 \| pdb_00004pj0	Download File View File

Structure of T.elongatus Photosystem II, rows of dimers crystal packing

Hellmich, J., Bommer, M., Burkhardt, A., Ibrahim, M., Kern, J., Meents, A., Mueh, F., Dobbek, H., Zouni, A.

(2014) Structure 22: 1607-1615

Released	2014-10-22
Method	X-RAY DIFFRACTION 2.437 Å
Organisms	Thermosynechococcus vestitus Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CL, CLA, DGD, FE, HEC, HEM, LHG, LMG, OEX, PHO, PL9, SO4, SQD, UNL

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4RKU \| pdb_00004rku	Download File View File

Crystal structure of plant Photosystem I at 3 Angstrom resolution

Mazor, Y., Borovikova, A., Greenberg, I., Nelson, N.

To be published

Released	2015-02-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pisum sativum
Macromolecule	Unique protein chains: 17
Unique Ligands	BCR, CL0, CLA, DGD, G3P, LHG, LMG, LUT, NEX, PQN, SF4

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4RVY \| pdb_00004rvy	Download File View File

Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)

Kupitz, C., Basu, S., Grotjohann, I., Fromme, R., Zatsepin, N., Rendek, K.N., Hunter, M., Shoeman, R.L., White, T.A., Wang, D., James, D., Yang, J.-H., Cobb, D.E., Reeder, B., Sierra, R.G., Liu, H., Barty, A., Aquila, A., Deponte, D., Kirian, R., Bari, S., Bergkamp, J.J., Beyerlein, K., Bogan, M.J., Caleman, C., Chao, T.-C., Conrad, C.E., Davis, K.M., Fleckenstein, H., Galli, L., Hau-Riege, S.P., Kassemeyer, S., Laksmono, H., Liang, M., Lomb, L., Marchesini, S., Martin, A.V., Messerschmidt, M., Milathianaki, D., Nass, K., Ros, A., Roy-Chowdhury, S., Schmidt, K., Seibert, M., Steinbrener, J., Stellato, F., Yan, L., Yoon, C., Moore, T.A., Moore, A.L., Pushkar, Y., Williams, G.J., Boutet, S., Doak, R.B., Weierstall, U., Frank, M., Chapman, H.N., Spence, J.C.H., Fromme, P.

(2014) Nature 513: 261-265

Released	2015-11-04
Method	X-RAY DIFFRACTION 5.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, MG, OEX, PHO, PL9, SQD

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4TNH \| pdb_00004tnh	Download File View File

RT XFEL structure of Photosystem II in the dark state at 4.9 A resolution

Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.

(2014) Nat Commun 5: 4371-4371

Released	2014-07-09
Method	X-RAY DIFFRACTION 4.90000680874 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMT, OEX, PHO, PL9, SQD

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4TNI \| pdb_00004tni	Download File View File

RT XFEL structure of Photosystem II 500 ms after the third illumination at 4.6 A resolution

Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.

(2014) Nat Commun 5: 4371-4371

Released	2014-07-09
Method	X-RAY DIFFRACTION 4.6 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMT, OEX, PHO, PL9, SQD

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4TNJ \| pdb_00004tnj	Download File View File

RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 4.5 A resolution

Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.

(2014) Nat Commun 5: 4371-4371

Released	2014-07-09
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMT, OEX, PHO, PL9, SQD

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4TNK \| pdb_00004tnk	Download File View File

RT XFEL structure of Photosystem II 250 microsec after the third illumination at 5.2 A resolution

Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.

(2014) Nat Commun 5: 4371-4371

Released	2014-07-09
Method	X-RAY DIFFRACTION 5.2 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMT, OEX, PHO, PL9, SQD

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4UB6 \| pdb_00004ub6	Download File View File

Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser

Suga, M., Akita, F., Hirata, K., Ueno, G., Murakami, H., Nakajima, Y., Shimizu, T., Yamashita, K., Yamamoto, M., Ago, H., Shen, J.R.

(2015) Nature 517: 99-103

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermostichus vulcanus
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, GOL, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, SQD, UNL

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1JB0 | pdb_00001jb0

1Q90 | pdb_00001q90

2WSC | pdb_00002wsc

2WSE | pdb_00002wse

2WSF | pdb_00002wsf

3JCU | pdb_00003jcu

3KZI | pdb_00003kzi

3LW5 | pdb_00003lw5

3PCQ | pdb_00003pcq

3WU2 | pdb_00003wu2

4FBY | pdb_00004fby

4FE1 | pdb_00004fe1

4IL6 | pdb_00004il6

4IXQ | pdb_00004ixq

4IXR | pdb_00004ixr

4KT0 | pdb_00004kt0

4L6V | pdb_00004l6v

4PJ0 | pdb_00004pj0

4RKU | pdb_00004rku

4RVY | pdb_00004rvy

4TNH | pdb_00004tnh

4TNI | pdb_00004tni

4TNJ | pdb_00004tnj

4TNK | pdb_00004tnk

4UB6 | pdb_00004ub6