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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.1.3.86

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Search Summary

This query matches 343 Structures.

Refinements

Structure Determination Methodology

experimental (343)

Scientific Name of Source Organism

	Homo sapiens (310)
	Mus musculus (24)
	Clostridioides difficile 630 (3)
	Clostridioides difficile QCD-32g58 (3)
	Clostridioides difficile (2)
	Plasmodium falciparum (2)
	synthetic construct (2)
	Clostridioides difficile R20291 (1)

Taxonomy

	Eukaryota (334)
	Bacteria (9)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (343)

Polymer Entity Type

Protein (343)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (147)
	1.5 - 2.0 (139)
	2.0 - 2.5 (44)
	2.5 - 3.0 (9)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (23)
	2020 - 2024 (319)

Enzyme Classification Name

	Hydrolases (170)
	Transferases (5)
	Isomerases (1)

Symmetry Type

	Asymmetric (342)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (65)
	All alpha proteins (52)
	All beta proteins (52)
	Artifacts (2)

AllSelected

1 to 25 of 343 Structures

Page 1 of 14

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Explore in 3D

4CI7 \| pdb_00004ci7	Download File View File

The crystal structure of the cysteine protease and lectin-like domains of Cwp84, a surface layer associated protein of Clostridium difficile

Bradshaw, W.J., Kirby, J.M., Thiyagarajan, N., Chambers, C.J., Davies, A.H., Roberts, A.K., Shone, C.C., Acharya, K.R.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1983

Released	2014-05-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Clostridioides difficile QCD-32g58
Macromolecule	CELL SURFACE PROTEIN (PUTATIVE CELL SURFACE-ASSOCIATED CYSTEINE PROTEASE) (protein)
Unique Ligands	CA, GOL, PGE, SO4

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4D59 \| pdb_00004d59	Download File View File

Clostridial Cysteine protease Cwp84 C116A after propeptide cleavage

Bradshaw, W.J., Roberts, A.K., Shone, C.C., Acharya, K.R.

(2015) Acta Crystallogr Sect F Struct Biol Cryst Commun 71: 295

Released	2015-03-04
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Clostridioides difficile QCD-32g58
Macromolecule	CELL SURFACE PROTEIN (PUTATIVE CELL SURFACE-ASSOCIATED CYSTEINE PROTEASE) (protein)
Unique Ligands	CA, JEF

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4D5A \| pdb_00004d5a	Download File View File

Clostridial Cysteine protease Cwp84 C116A after propeptide cleavage

Bradshaw, W.J., Roberts, A.K., Shone, C.C., Acharya, K.R.

(2015) Acta Crystallogr Sect F Struct Biol Cryst Commun 71: 295

Released	2015-03-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Clostridioides difficile QCD-32g58
Macromolecule	CELL SURFACE PROTEIN (PUTATIVE CELL SURFACE-ASSOCIATED CYSTEINE PROTEASE) (protein)
Unique Ligands	CA, GOL, PGE

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5M9A \| pdb_00005m9a	Download File View File

Human angiogenin PD variant H13R

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	TAR

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5M9C \| pdb_00005m9c	Download File View File

Human angiogenin ALS variant K40R

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	PEG, TAR

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5M9G \| pdb_00005m9g	Download File View File

Human angiogenin PD variant K54R

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	PEG, TAR

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5M9J \| pdb_00005m9j	Download File View File

Human angiogenin PD variant K60E

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	TLA

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5M9M \| pdb_00005m9m	Download File View File

Human angiogenin PD variant Q77P

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	BTB, EDO, PGE, SO4

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5M9P \| pdb_00005m9p	Download File View File

Human angiogenin ALS variant T80S

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	SO4

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5M9Q \| pdb_00005m9q	Download File View File

Human angiogenin PD variant R95Q

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	PEG, PGE, SO4

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5M9R \| pdb_00005m9r	Download File View File

Human angiogenin ALS variant F100I

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	PEG, TAR, TLA

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5M9S \| pdb_00005m9s	Download File View File

Human angiogenin ALS variant V103I

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	TAR

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5M9T \| pdb_00005m9t	Download File View File

Human angiogenin ALS variant H114R

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	BO4, GOL

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5M9V \| pdb_00005m9v	Download File View File

Human angiogenin PD/ALS variant R121C

Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Angiogenin (protein)
Unique Ligands	GSH, TLA

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5NJL \| pdb_00005njl	Download File View File

Cwp2 from Clostridium difficile

Bradshaw, W.J., Kirby, J.M., Roberts, A.K., Shone, C.C., Acharya, K.R.

(2017) FEBS J 284: 2886-2898

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Cell surface protein (Putative S-layer protein) (protein)
Unique Ligands	SO4

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5OQ2 \| pdb_00005oq2	Download File View File

Se-SAD structure of the functional region of Cwp19 from Clostridium difficile

Bradshaw, W.J., Kirby, J.M., Roberts, A.K., Shone, C.C., Acharya, K.R.

(2017) FEBS J 284: 4343-4357

Released	2017-11-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridioides difficile
Macromolecule	Cwp19 (protein)
Unique Ligands	EDO, PO4

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5OQ3 \| pdb_00005oq3	Download File View File

High resolution structure of the functional region of Cwp19 from Clostridium difficile

Bradshaw, W.J., Kirby, J.M., Roberts, A.K., Shone, C.C., Acharya, K.R.

(2017) FEBS J 284: 4343-4357

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Clostridioides difficile
Macromolecule	Cwp19 (protein)
Unique Ligands	CL, EDO, PEG

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5RW2 \| pdb_00005rw2	Download File View File

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2737076969

Bradshaw, W.J., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-11-11
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, T0V

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5RW3 \| pdb_00005rw3	Download File View File

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2064898339

Bradshaw, W.J., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-11-11
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, WLY

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5RW4 \| pdb_00005rw4	Download File View File

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z19735192

Bradshaw, W.J., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-11-11
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, WLV

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5RW5 \| pdb_00005rw5	Download File View File

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z69092635

Bradshaw, W.J., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-11-11
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, WMV

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5RW6 \| pdb_00005rw6	Download File View File

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434816

Bradshaw, W.J., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-11-11
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, WLS

Explore in 3D

5RW7 \| pdb_00005rw7	Download File View File

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z86622311

Bradshaw, W.J., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-11-11
Method	X-RAY DIFFRACTION 1.23 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, WMY

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5RW8 \| pdb_00005rw8	Download File View File

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z28290384

Bradshaw, W.J., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-11-11
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, WN1

Explore in 3D

5RW9 \| pdb_00005rw9	Download File View File

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z203581214

Bradshaw, W.J., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-11-11
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, PO4, QKZ

1 to 25 of 343 Structures

Page 1 of 14

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4CI7 | pdb_00004ci7

4D59 | pdb_00004d59

4D5A | pdb_00004d5a

5M9A | pdb_00005m9a

5M9C | pdb_00005m9c

5M9G | pdb_00005m9g

5M9J | pdb_00005m9j

5M9M | pdb_00005m9m

5M9P | pdb_00005m9p

5M9Q | pdb_00005m9q

5M9R | pdb_00005m9r

5M9S | pdb_00005m9s

5M9T | pdb_00005m9t

5M9V | pdb_00005m9v

5NJL | pdb_00005njl

5OQ2 | pdb_00005oq2

5OQ3 | pdb_00005oq3

5RW2 | pdb_00005rw2

5RW3 | pdb_00005rw3

5RW4 | pdb_00005rw4

5RW5 | pdb_00005rw5

5RW6 | pdb_00005rw6

5RW7 | pdb_00005rw7

5RW8 | pdb_00005rw8

5RW9 | pdb_00005rw9