7PN9
Evolved unspecific peroxygenase with A77L mutation in complex with lauric acid
- PDB DOI: https://doi.org/10.2210/pdb7PN9/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Cyclocybe aegerita
- Expression System: Komagataella phaffii CBS 7435
- Mutation(s): Yes 
- Deposited: 2021-09-06 Released: 2023-01-25 
- Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.277 
- R-Value Work: 0.247 
- R-Value Observed: 0.249 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Aromatic peroxygenase | 328 | Cyclocybe aegerita | Mutation(s): 6  Gene Names: APO1 EC: 1.11.2.1 | ||
UniProt | |||||
Find proteins for B9W4V6 (Cyclocybe aegerita) Explore B9W4V6  Go to UniProtKB:  B9W4V6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B9W4V6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 7 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM (Subject of Investigation/LOI) Query on HEM | B [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
NAG Query on NAG | E [auth A], F [auth A], J [auth A], K [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
DAO (Subject of Investigation/LOI) Query on DAO | I [auth A] | LAURIC ACID C12 H24 O2 POULHZVOKOAJMA-UHFFFAOYSA-N | |||
PO4 Query on PO4 | G [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
GOL Query on GOL | H [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG (Subject of Investigation/LOI) Query on MG | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.277 
- R-Value Work: 0.247 
- R-Value Observed: 0.249 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 51.088 | α = 90 |
b = 57.783 | β = 109.5 |
c = 60.859 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XDS | data scaling |
MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-01-25  Deposition Author(s): Fernandez-Garcia, A., Sanz-Aparicio, J.
Funding Organization | Location | Grant Number |
---|---|---|
Spanish Ministry of Science, Innovation, and Universities | Spain | Comunidad de Madrid Synergy CAM project Y2018/BIO-4738-EVOCHIMERA-CM |
Revision History (Full details and data files)
- Version 1.0: 2023-01-25
Type: Initial release - Version 1.1: 2023-02-01
Changes: Database references - Version 1.2: 2023-03-01
Changes: Database references - Version 1.3: 2024-02-07
Changes: Data collection, Refinement description