Additional Resources
Structure Prediction
■ Software
Software for structure prediction
Software
AlphaFold2 | Open source code for AlphaFold |
RoseTTAFold | A software tool that uses deep learning to quickly and accurately predict protein structures based on limited information. |
OpenFold | Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2 |
OmegaFold | OmegaFold Release Code |
HelixFold | An Efficient and Improved Implementation of AlphaFold 2 using PaddlePaddle |
HelixFold-single | A single sequence language-model-based prediction network |
ESMFold | Evolutionary Scale Modeling (esm): Pretrained language models for proteins |
Web servers
ColabFold | AlphaFold2 using MMseqs2 |
I-TASSER | (Iterative Threading ASSEmbly Refinement) is a hierarchical approach to protein structure prediction and structure-based function annotation |
COSMIC2 | Online resource for freely-available structure prediction using AlphaFold2, ColabFold, and ESMFold at the San Diego Supercomputer Center. |
Databases of pre-computed models
AlphaFold Protein Structure Database | AlphaFold is an AI system developed by DeepMind that predicts a protein’s 3D structure from its amino acid sequence |
ModelArchive | Repository for theoretical models of macromolecular structures |
ModBase | A database of comparative protein structure models |
SWISS-MODEL Repository | A database of annotated protein structure homology models |
Please report any encountered broken links to info@rcsb.org
Last updated: 9/30/2024