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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Royant, A."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Danio rerio (22)
	Homo sapiens (9)
	Thermotoga maritima (5)
	Aeropyrum pernix (3)
	Helicoma ambiens (1)
	Priestia megaterium (1)

Taxonomy

	Eukaryota (31)
	Bacteria (6)
	Archaea (3)

Experimental Method

	X-RAY DIFFRACTION (37)
	ELECTRON CRYSTALLOGRAPHY (3)

Polymer Entity Type

Protein (40)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (20)
	2.0 - 2.5 (12)
	2.5 - 3.0 (3)

Release Date

	2015 - 2019 (21)
	2020 - 2024 (19)

Enzyme Classification Name

	Hydrolases (13)
	Lyases (5)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (33)
	Cyclic (6)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (28)
	Artifacts (6)

AllSelected

1 to 25 of 40 Structures

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5TD7 \| pdb_00005td7	Download File View File

Crystal structure of histone deacetylase 10

Hai, Y., Shinsky, S.A., Porter, N.J., Christianson, D.W.

(2017) Nat Commun 8: 15368-15368

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Danio rerio
Macromolecule	Zgc:55652 (protein)
Unique Ligands	1PE, FKS, K, PO4, ZN

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5THS \| pdb_00005ths	Download File View File

Crystal Structure of G302A HDAC8 in complex with M344

Porter, N.J., Christianson, D.W.

(2016) Biochemistry 55: 6718-6729

Released	2016-12-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, EDO, K, ZN

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5THT \| pdb_00005tht	Download File View File

Crystal Structure of G303A HDAC8 in complex with M344

Porter, N.J., Christianson, D.W.

(2016) Biochemistry 55: 6718-6729

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.407 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, EDO, K, ZN

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5THU \| pdb_00005thu	Download File View File

Crystal Structure of G304A HDAC8 in complex with M344

Porter, N.J., Christianson, D.W.

(2016) Biochemistry 55: 6718-6729

Released	2016-12-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, GGG, K, ZN

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5THV \| pdb_00005thv	Download File View File

Crystal Structure of G305A HDAC8 in complex with M344

Porter, N.J., Christianson, D.W.

(2016) Biochemistry 55: 6718-6729

Released	2016-12-21
Method	X-RAY DIFFRACTION 1.868 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, EDO, K, ZN

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5VI6 \| pdb_00005vi6	Download File View File

Crystal structure of histone deacetylase 8 in complex with trapoxin A

Porter, N.J., Christianson, D.W.

(2017) ACS Chem Biol 12: 2281-2286

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.237 Å
Organisms	Helicoma ambiens Homo sapiens
Macromolecule	Histone deacetylase 8 (protein) Trapoxin A (protein)
Unique Ligands	DIO, EDO, K, ZN

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5W5K \| pdb_00005w5k	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with KV70

Porter, N.J., Christianson, D.W.

(2019) J Med Chem 62: 1138-1166

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Danio rerio
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	K, K70, ZN

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5WGI \| pdb_00005wgi	Download File View File

Ultrahigh resolution crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with TSA

Porter, N.J., Christianson, D.W.

(2017) Proc Natl Acad Sci U S A 114: 13459-13464

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	CL, EDO, GOL, K, MG, PEG, TSN, ZN

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5WGK \| pdb_00005wgk	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HPB

Porter, N.J., Christianson, D.W.

(2017) Proc Natl Acad Sci U S A 114: 13459-13464

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.822 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	AGJ, EDO, IOD, K, PEG, ZN

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5WGL \| pdb_00005wgl	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with ricolinostat (ACY-1215)

Porter, N.J., Christianson, D.W.

(2017) Proc Natl Acad Sci U S A 114: 13459-13464

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	AH4, EDO, FLC, K, PEG, ZN

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5WGM \| pdb_00005wgm	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with ACY-1083

Porter, N.J., Christianson, D.W.

(2017) Proc Natl Acad Sci U S A 114: 13459-13464

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	AH7, EDO, K, PEG, PGE, ZN

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6CSP \| pdb_00006csp	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with cyclohexenylhydroxamate

Porter, N.J., Christianson, D.W.

(2018) Biochemistry 57: 3916-3924

Released	2018-05-30
Method	X-RAY DIFFRACTION 1.237 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	CL, EDO, FBM, K, PEG, ZN

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6CSQ \| pdb_00006csq	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with cyclohexylhydroxamate

Porter, N.J., Christianson, D.W.

(2018) Biochemistry 57: 3916-3924

Released	2018-05-30
Method	X-RAY DIFFRACTION 2.031 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	F9P, K, ZN

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6CSR \| pdb_00006csr	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with phenylhydroxamate

Porter, N.J., Christianson, D.W.

(2018) Biochemistry 57: 3916-3924

Released	2018-05-30
Method	X-RAY DIFFRACTION 1.619 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	BHO, EDO, K, ZN

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6CSS \| pdb_00006css	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with cyclopentenylhydroxamate

Porter, N.J., Christianson, D.W.

(2018) Biochemistry 57: 3916-3924

Released	2018-05-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	EDO, FBJ, K, ZN

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6DVL \| pdb_00006dvl	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with DDK-115

Porter, N.J., Christianson, D.W.

(2018) J Med Chem 61: 8054-8060

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	HBG, K, ZN

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6DVM \| pdb_00006dvm	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with DDK-122

Porter, N.J., Christianson, D.W.

(2018) J Med Chem 61: 8054-8060

Released	2018-08-29
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	BTB, EDO, HBJ, K, ZN

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6DVN \| pdb_00006dvn	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with DDK-137

Osko, J.D., Christianson, D.W.

(2018) J Med Chem 61: 8054-8060

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	EDO, HB7, K, ZN

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6DVO \| pdb_00006dvo	Download File View File

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with Bavarostat

Porter, N.J., Christianson, D.W.

(2018) J Med Chem 61: 8054-8060

Released	2018-08-29
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Danio rerio
Macromolecule	Hdac6 protein (protein)
Unique Ligands	EDO, HBV, K, PRO, ZN

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6M80 \| pdb_00006m80	Download File View File

Collagen peptide containing aza-proline and aza-glycine

Chenoweth, D.M., Kasznel, A.J., Porter, N.J.

(2019) Chem Sci 10: 6979-6983

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Collagen peptide containing aza-proline and aza-glycine (protein)
Unique Ligands	EDO, SO4