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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sankaran, B."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Pseudomonas aeruginosa PAO1 (11)
	Homo sapiens (10)

Taxonomy

	Bacteria (11)
	Eukaryota (10)

Experimental Method

X-RAY DIFFRACTION (21)

Polymer Entity Type

Protein (21)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (9)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (2)
	2020 - 2024 (19)

Enzyme Classification Name

	Hydrolases (19)
	Transferases (2)

Symmetry Type

	Asymmetric (19)
	Cyclic (2)

SCOP Classification

	All alpha proteins (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 21 of 21 Structures

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4V25 \| pdb_00004v25	Download File View File

VER-246608, a novel pan-isoform ATP competitive inhibitor of pyruvate dehydrogenase kinase, disrupts Warburg metabolism and induces context- dependent cytostasis in cancer cells

Moore, J.D., Staniszewska, A., Shaw, T., D'Alessandro, J., Davis, B., Surgenor, A., Baker, L., Matassova, N., Murray, J., Macias, A., Brough, P., Wood, M., Mahon, P.C.

(2014) Oncotarget 5: 12862-12876

Released	2014-12-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	[PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)] KINASE ISOZYME 2, MITOCHONDRIAL (protein)
Unique Ligands	MG, SZ6, TF3

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4V26 \| pdb_00004v26	Download File View File

VER-246608, a novel pan-isoform ATP competitive inhibitor of pyruvate dehydrogenase kinase, disrupts Warburg metabolism and induces context- dependent cytostasis in cancer cells

Moore, J.D., Staniszewska, A., Shaw, T., D'Alessandro, J., Davis, B., Surgenor, A., Baker, L., Matassova, N., Murray, J., Macias, A., Brough, P., Wood, M., Mahon, P.C.

(2014) Oncotarget 5: 12862-12876

Released	2014-12-03
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	[PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)] KINASE ISOZYME 2, MITOCHONDRIAL (protein)
Unique Ligands	7TJ, MG, TF3

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7CI4 \| pdb_00007ci4	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Mima, M., Baker, L.M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	CL, FXU, MG, ZN

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7CI5 \| pdb_00007ci5	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Mima, M., Baker, L.M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	FXX, MPO, ZN

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7CI6 \| pdb_00007ci6	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Mima, M., Baker, L.M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	CL, FY6, ZN

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7CI7 \| pdb_00007ci7	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Mima, M., Baker, L.M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	FY9, ZN

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7CI8 \| pdb_00007ci8	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Mima, M., Baker, L.M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	FYF, MG, ZN

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7CI9 \| pdb_00007ci9	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Mima, M., Baker, L.M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	EDO, FYL, PO4, ZN

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7CIA \| pdb_00007cia	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Baker, L.M., Mima, M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	MPB, ZN

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7CIB \| pdb_00007cib	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Baker, L.M., Mima, M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	DMS, FYR, ZN

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7CIC \| pdb_00007cic	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Baker, L.M., Mima, M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	FZ0, ZN

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7CID \| pdb_00007cid	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Baker, L.M., Mima, M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	DMS, FZ3, ZN

Explore in 3D

7CIE \| pdb_00007cie	Download File View File

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Baker, L.M., Mima, M., Surgenor, A., Robertson, A.

(2020) J Med Chem 63: 14805-14820

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	FZ6, ZN

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9FIO \| pdb_00009fio	Download File View File

Structure-guided discovery of selective USP7 inhibitors with in vivo activity

Baker, L.M., Murray, J., Hubbard, R.E., Whitehead, N.

(2024) J Med Chem 67: 18993-19009

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	R4D

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9FIP \| pdb_00009fip	Download File View File

Structure-guided discovery of selective USP7 inhibitors with in vivo activity

Baker, L.M., Murray, J., Hubbard, R.E., Whitehead, N.

(2024) J Med Chem 67: 18993-19009

Released	2024-11-06
Method	X-RAY DIFFRACTION 3.06 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	A1ICU

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9FIQ \| pdb_00009fiq	Download File View File

Structure-guided discovery of selective USP7 inhibitors with in vivo activity

Baker, L.M., Murray, J., Hubbard, R.E., Whitehead, N.

(2024) J Med Chem 67: 18993-19009

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	A1ICV

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9FIR \| pdb_00009fir	Download File View File

Structure-guided discovery of selective USP7 inhibitors with in vivo activity

Baker, L.M., Murray, J., Hubbard, R.E., Whitehead, N.

(2024) J Med Chem 67: 18993-19009

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	A1ICS

Explore in 3D

9FIS \| pdb_00009fis	Download File View File

Structure-guided discovery of selective USP7 inhibitors with in vivo activity

Baker, L.M., Murray, J., Hubbard, R.E., Whitehead, N.

(2024) J Med Chem 67: 18993-19009

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	A1ICW

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9FIT \| pdb_00009fit	Download File View File

Structure-guided discovery of selective USP7 inhibitors with in vivo activity

Baker, L.M., Murray, J., Hubbard, R.E., Whitehead, N.

(2024) J Med Chem 67: 18993-19009

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	A1ICT

Explore in 3D

9FIU \| pdb_00009fiu	Download File View File

Structure-guided discovery of selective USP7 inhibitors with in vivo activity

Baker, L.M., Murray, J., Hubbard, R.E., Whitehead, N.

(2024) J Med Chem 67: 18993-19009

Released	2024-11-06
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	A1ICX

Explore in 3D

9FIV \| pdb_00009fiv	Download File View File

Structure-guided discovery of selective USP7 inhibitors with in vivo activity

Baker, L.M., Murray, J., Hubbard, R.E., Whitehead, N.

(2024) J Med Chem 67: 18993-19009

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	A1ICO

1 to 21 of 21 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4V25 | pdb_00004v25

4V26 | pdb_00004v26

7CI4 | pdb_00007ci4

7CI5 | pdb_00007ci5

7CI6 | pdb_00007ci6

7CI7 | pdb_00007ci7

7CI8 | pdb_00007ci8

7CI9 | pdb_00007ci9

7CIA | pdb_00007cia

7CIB | pdb_00007cib

7CIC | pdb_00007cic

7CID | pdb_00007cid

7CIE | pdb_00007cie

9FIO | pdb_00009fio

9FIP | pdb_00009fip

9FIQ | pdb_00009fiq

9FIR | pdb_00009fir

9FIS | pdb_00009fis

9FIT | pdb_00009fit

9FIU | pdb_00009fiu

9FIV | pdb_00009fiv