Macromolecule Content

Total Structure Weight: 43.93 kDa
Atom Count: 3,235
Modelled Residue Count: 360
Deposited Residue Count: 390
Unique protein chains: 1

8H1A

Crystal structure of MnmM from S. aureus in apo state (1.44 A)

PDB DOI: 10.2210/pdb8H1A/pdb

Classification: TRANSFERASE
Organism(s): Staphylococcus aureus subsp. aureus NCTC 8325
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-10-01 Released: 2023-01-25
Deposition Author(s): Kim, J., Cho, G., Lee, J.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.44 Å
R-Value Free: 0.192
R-Value Work: 0.152
R-Value Observed: 0.154

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of MnmM from S. aureus in apo state (1.44 A)

Kim, J., Cho, G., Lee, J.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
rRNA methylase YtqB	A, B	195	Staphylococcus aureus subsp. aureus NCTC 8325	Mutation(s): 0 Gene Names: SAOUHSC_01878
UniProt
Find proteins for Q2FXG9 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FXG9 Go to UniProtKB: Q2FXG9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2FXG9
Protein Feature View Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.44 Å
R-Value Free: 0.192
R-Value Work: 0.152
R-Value Observed: 0.154
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.494	α = 90
b = 63.91	β = 90
c = 135.044	γ = 90

Software Package:

Software Name	Purpose
MxDC	data collection
STARANISO	data scaling
XDS	data reduction
MOLREP	phasing
Coot	model building
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-01-25

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2023-01-25
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.